Wall clock time and date at job start Mon Mar 30 2020 02:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37659 * 120.07238 * 2 1 4 4 C 1.38524 * 120.30546 * 180.02562 * 3 2 1 5 5 C 1.39149 * 120.44600 * 359.97438 * 4 3 2 6 6 O 1.35904 * 119.93763 * 180.02562 * 5 4 3 7 7 C 1.38102 * 120.13336 * 359.78482 * 5 4 3 8 8 C 1.50699 * 120.15256 * 180.25922 * 7 5 4 9 9 C 1.40634 * 119.69394 * 0.46281 * 7 5 4 10 10 C 1.41406 * 120.22035 * 179.79173 * 9 7 5 11 11 H 1.07991 * 120.00047 * 132.00425 * 10 9 7 12 12 C 1.39938 * 119.99665 * 311.72615 * 10 9 7 13 13 N 1.30825 * 120.00200 * 340.87944 * 12 10 9 14 14 Si 1.86797 * 119.99755 * 160.87633 * 12 10 9 15 15 H 1.48492 * 109.47190 * 90.00509 * 14 12 10 16 16 H 1.48503 * 109.47106 * 210.00532 * 14 12 10 17 17 H 1.48507 * 109.47289 * 329.99878 * 14 12 10 18 18 H 1.09002 * 109.47299 * 264.69622 * 1 2 3 19 19 H 1.09002 * 109.47160 * 24.69700 * 1 2 3 20 20 H 1.09004 * 109.47216 * 144.69856 * 1 2 3 21 21 H 1.08006 * 119.85154 * 0.02562 * 3 2 1 22 22 H 1.08003 * 119.77500 * 179.97438 * 4 3 2 23 23 H 0.96698 * 113.99953 * 89.99303 * 6 5 4 24 24 H 1.09011 * 109.47004 * 270.20792 * 8 7 5 25 25 H 1.08994 * 109.47828 * 30.20784 * 8 7 5 26 26 H 1.08999 * 109.47247 * 150.21361 * 8 7 5 27 27 H 0.97000 * 120.00424 * 185.05619 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1913 0.0000 4 6 3.5820 1.1969 -0.0005 5 6 4.2920 0.0002 -0.0005 6 8 5.6509 0.0178 -0.0005 7 6 3.6185 -1.2055 0.0045 8 6 4.3870 -2.5018 0.0104 9 6 2.2122 -1.2179 -0.0003 10 6 1.5113 -2.4461 0.0003 11 1 0.6978 -2.6031 0.6929 12 6 1.8682 -3.4557 -0.9005 13 7 2.5656 -3.1634 -1.9681 14 14 1.3489 -5.2209 -0.5785 15 1 0.0270 -5.4705 -1.2071 16 1 2.3553 -6.1465 -1.1581 17 1 1.2520 -5.4492 0.8857 18 1 -0.3634 -0.0950 1.0233 19 1 -0.3633 0.9337 -0.4294 20 1 -0.3634 -0.8387 -0.5939 21 1 1.6555 2.1259 0.0004 22 1 4.1145 2.1365 -0.0009 23 1 6.0442 0.0230 0.8828 24 1 4.5758 -2.8169 -1.0160 25 1 5.3360 -2.3593 0.5271 26 1 3.8049 -3.2669 0.5240 27 1 2.7504 -3.8485 -2.6294 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075544921.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:31 Heat of formation + Delta-G solvation = -39.891973 kcal Electronic energy + Delta-G solvation = -11924.020600 eV Core-core repulsion = 9839.157132 eV Total energy + Delta-G solvation = -2084.863468 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.51920 -35.94525 -33.64259 -31.09717 -30.21099 -27.04368 -24.91820 -24.37150 -20.57663 -19.36506 -17.61643 -16.35857 -15.00068 -14.57988 -14.32340 -13.54116 -12.91722 -12.45337 -12.11261 -11.85229 -11.71592 -11.54849 -11.25846 -10.90392 -10.73201 -10.55865 -10.18391 -10.07034 -9.66055 -9.17565 -8.78689 -7.06286 -7.05014 -6.61614 -4.38674 2.66442 2.84640 3.12662 3.13214 3.17928 4.01935 4.64411 5.16035 5.48767 6.11475 6.28485 6.33159 6.49302 6.66119 6.73574 6.84711 6.94929 7.08150 7.16986 7.28156 7.31059 7.65191 7.77458 7.83884 8.01468 8.15428 8.45303 8.77128 8.90961 8.99283 10.36171 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.037923 B = 0.016195 C = 0.012183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.157121 B = 1728.508265 C = 2297.671769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.171 4.171 3 C -0.098 4.098 4 C -0.238 4.238 5 C 0.100 3.900 6 O -0.508 6.508 7 C -0.144 4.144 8 C -0.076 4.076 9 C 0.130 3.870 10 C -0.482 4.482 11 H 0.079 0.921 12 C 0.084 3.916 13 N -0.801 5.801 14 Si 0.894 3.106 15 H -0.272 1.272 16 H -0.277 1.277 17 H -0.262 1.262 18 H 0.043 0.957 19 H 0.037 0.963 20 H 0.065 0.935 21 H 0.094 0.906 22 H 0.095 0.905 23 H 0.367 0.633 24 H 0.067 0.933 25 H 0.024 0.976 26 H 0.055 0.945 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.146 0.936 3.430 3.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.172 4.172 3 C -0.116 4.116 4 C -0.258 4.258 5 C 0.056 3.944 6 O -0.316 6.316 7 C -0.146 4.146 8 C -0.133 4.133 9 C 0.128 3.872 10 C -0.513 4.513 11 H 0.097 0.903 12 C -0.132 4.132 13 N -0.427 5.427 14 Si 0.719 3.281 15 H -0.198 1.198 16 H -0.202 1.202 17 H -0.186 1.186 18 H 0.062 0.938 19 H 0.056 0.944 20 H 0.084 0.916 21 H 0.112 0.888 22 H 0.114 0.886 23 H 0.220 0.780 24 H 0.086 0.914 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.222 0.814 2.623 2.756 hybrid contribution -0.085 -0.739 0.435 0.862 sum 0.138 0.075 3.058 3.062 Atomic orbital electron populations 1.20398 0.93087 1.00487 1.00059 1.20079 0.94878 0.92999 1.09288 1.20351 0.93226 0.96303 1.01706 1.20661 0.94115 0.95868 1.15131 1.18200 0.80945 0.92517 1.02735 1.84805 1.18112 1.96795 1.31851 1.20274 0.94317 0.93033 1.06998 1.20423 0.96080 0.95341 1.01423 1.17166 0.90037 0.92120 0.87869 1.19193 1.16327 0.97205 1.18586 0.90260 1.25665 0.93207 0.99946 0.94380 1.69808 1.30885 1.35439 1.06608 0.86548 0.78966 0.82706 0.79921 1.19755 1.20220 1.18608 0.93820 0.94390 0.91610 0.88793 0.88647 0.77983 0.91430 0.95658 0.92628 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.74 9.49 36.00 0.34 -1.40 15 2 C -0.17 -4.16 5.94 -103.89 -0.62 -4.78 15 3 C -0.10 -2.21 9.65 -39.69 -0.38 -2.60 15 4 C -0.24 -5.47 9.99 -39.14 -0.39 -5.86 15 5 C 0.10 2.40 6.67 -39.29 -0.26 2.14 15 6 O -0.51 -10.79 12.53 -19.44 -0.24 -11.04 15 7 C -0.14 -3.71 5.60 -103.77 -0.58 -4.30 15 8 C -0.08 -1.83 8.08 36.01 0.29 -1.54 15 9 C 0.13 3.43 5.20 -106.84 -0.56 2.88 15 10 C -0.48 -12.55 6.88 -37.74 -0.26 -12.81 15 11 H 0.08 2.00 7.85 -52.49 -0.41 1.59 15 12 C 0.08 2.11 3.53 -17.34 -0.06 2.05 15 13 N -0.80 -21.10 10.89 55.55 0.60 -20.49 15 14 Si 0.89 18.85 29.60 -169.99 -5.03 13.82 15 15 H -0.27 -5.67 7.11 56.52 0.40 -5.27 15 16 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 17 H -0.26 -5.47 7.11 56.52 0.40 -5.07 15 18 H 0.04 0.84 8.14 -51.93 -0.42 0.41 15 19 H 0.04 0.69 8.05 -51.93 -0.42 0.28 15 20 H 0.07 1.43 7.32 -51.93 -0.38 1.05 15 21 H 0.09 1.85 8.06 -52.48 -0.42 1.43 15 22 H 0.10 1.97 8.06 -52.48 -0.42 1.54 15 23 H 0.37 5.85 9.06 45.56 0.41 6.26 15 24 H 0.07 1.72 6.72 -51.92 -0.35 1.37 15 25 H 0.02 0.53 7.53 -51.93 -0.39 0.14 15 26 H 0.05 1.33 6.42 -51.93 -0.33 1.00 15 27 H 0.28 6.77 8.30 -40.82 -0.34 6.43 15 LS Contribution 230.87 15.07 3.48 3.48 Total: -1.00 -28.71 230.87 -5.94 -34.65 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -2.27 Total: 5.81 kcal Atomic # 6 Polarization: -23.74 SS G_CDS: -2.48 Total: -26.22 kcal Atomic # 7 Polarization: -21.10 SS G_CDS: 0.60 Total: -20.49 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.24 Total: -11.04 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.71 -5.94 -34.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075544921.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.240 kcal (2) G-P(sol) polarization free energy of solvation -28.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds