Wall clock time and date at job start Mon Mar 30 2020 02:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 120.00003 * 2 1 4 4 C 1.52997 * 109.47390 * 124.99506 * 3 2 1 5 5 H 1.09002 * 109.47153 * 304.99634 * 4 3 2 6 6 C 1.50699 * 109.47078 * 184.99841 * 4 3 2 7 7 H 1.07999 * 120.00019 * 359.97438 * 6 4 3 8 8 C 1.37877 * 120.00129 * 180.02562 * 6 4 3 9 9 N 1.31519 * 119.99723 * 359.97438 * 8 6 4 10 10 Si 1.86803 * 119.99900 * 179.97438 * 8 6 4 11 11 H 1.48491 * 109.47312 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.46948 * 119.99892 * 10 8 6 13 13 H 1.48500 * 109.46809 * 239.99811 * 10 8 6 14 14 C 1.50701 * 109.47212 * 64.99632 * 4 3 2 15 15 C 1.34510 * 125.79024 * 239.99707 * 14 4 3 16 16 C 1.41387 * 106.84213 * 180.02562 * 15 14 4 17 17 C 1.34517 * 106.83695 * 0.02562 * 16 15 14 18 18 O 1.34304 * 108.42220 * 359.73273 * 17 16 15 19 19 H 1.08002 * 119.99978 * 180.02562 * 1 2 3 20 20 H 1.08002 * 119.99789 * 0.02562 * 1 2 3 21 21 H 1.07995 * 120.00152 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.46949 * 4.98825 * 3 2 1 23 23 H 1.09004 * 109.46555 * 244.99597 * 3 2 1 24 24 H 0.97003 * 119.99231 * 179.97438 * 9 8 6 25 25 H 1.07999 * 126.57952 * 0.04345 * 15 14 4 26 26 H 1.07996 * 126.58312 * 179.97438 * 16 15 14 27 27 H 1.08002 * 125.78864 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1817 5 1 2.4882 1.1472 2.1061 6 6 3.6990 2.6841 1.2541 7 1 3.4530 3.4463 0.5295 8 6 4.6212 2.9468 2.2447 9 7 4.9211 2.0185 3.1268 10 14 5.4448 4.6211 2.3340 11 1 4.9385 5.4811 1.2344 12 1 5.1366 5.2553 3.6409 13 1 6.9144 4.4577 2.1973 14 6 4.0838 0.2673 0.9952 15 6 4.3193 -0.7595 1.8316 16 6 5.3817 -1.5071 1.2735 17 6 5.7322 -0.8920 0.1297 18 8 4.9391 0.1790 -0.0366 19 1 -0.5400 -0.9353 0.0004 20 1 -0.5400 0.9353 -0.0004 21 1 1.8500 -0.9353 0.0004 22 1 1.3586 2.1317 0.0894 23 1 2.6214 1.4025 -0.9314 24 1 5.5703 2.2033 3.8235 25 1 3.7968 -0.9722 2.7525 26 1 5.8269 -2.4001 1.6867 27 1 6.5152 -1.2087 -0.5434 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075544958.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:06 Heat of formation + Delta-G solvation = 20.928529 kcal Electronic energy + Delta-G solvation = -11808.642723 eV Core-core repulsion = 9726.416630 eV Total energy + Delta-G solvation = -2082.226093 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.24418 -35.48863 -32.86043 -31.66324 -30.31481 -27.17090 -25.04221 -21.82094 -20.46801 -19.63738 -18.64445 -16.67060 -15.72838 -15.04412 -14.39621 -14.35095 -13.40722 -12.83200 -12.47926 -12.07303 -11.68992 -11.53330 -11.12019 -11.02459 -10.82298 -10.42092 -10.29589 -9.72606 -9.19502 -8.71035 -8.63113 -8.53588 -7.08795 -6.02743 -4.16629 2.87660 3.05829 3.28159 3.35908 3.39595 3.96313 4.32227 4.41393 5.25639 5.57517 5.82305 5.94656 6.10167 6.22773 6.34754 6.55115 6.57427 6.81966 7.03907 7.16236 7.24462 7.31933 7.47903 7.51227 7.80603 7.84103 8.17400 8.56181 8.86283 9.49964 10.98620 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.029338 B = 0.016039 C = 0.011812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.164551 B = 1745.303380 C = 2369.993618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.128 4.128 3 C -0.088 4.088 4 C 0.118 3.882 5 H 0.059 0.941 6 C -0.527 4.527 7 H 0.064 0.936 8 C 0.066 3.934 9 N -0.871 5.871 10 Si 0.894 3.106 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.284 1.284 14 C 0.092 3.908 15 C -0.237 4.237 16 C -0.210 4.210 17 C -0.099 4.099 18 O -0.177 6.177 19 H 0.086 0.914 20 H 0.092 0.908 21 H 0.101 0.899 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.262 0.738 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.366 -3.959 -4.015 6.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.146 4.146 3 C -0.125 4.125 4 C 0.099 3.901 5 H 0.077 0.923 6 C -0.564 4.564 7 H 0.083 0.917 8 C -0.138 4.138 9 N -0.507 5.507 10 Si 0.722 3.278 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.210 1.210 14 C 0.040 3.960 15 C -0.256 4.256 16 C -0.229 4.229 17 C -0.166 4.166 18 O -0.073 6.073 19 H 0.105 0.895 20 H 0.110 0.890 21 H 0.119 0.881 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.145 0.855 26 H 0.144 0.856 27 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -2.241 -3.795 -4.089 6.012 hybrid contribution 0.904 0.523 0.505 1.160 sum -1.337 -3.272 -3.584 5.034 Atomic orbital electron populations 1.23653 0.95955 1.00840 1.05676 1.23256 0.95851 0.99563 0.95922 1.20914 0.98032 0.93461 1.00105 1.17555 0.87655 0.90959 0.93917 0.92272 1.21065 1.24734 0.96813 1.13824 0.91745 1.25051 0.96329 0.97057 0.95377 1.70028 1.32503 1.32635 1.15503 0.86493 0.79303 0.84045 0.77976 1.19576 1.20890 1.21012 1.23359 0.92491 0.95148 0.85001 1.21128 1.03198 0.98917 1.02381 1.21573 1.01362 1.02418 0.97596 1.23475 1.00580 0.91024 1.01487 1.83969 1.39006 1.40992 1.43313 0.89531 0.88997 0.88084 0.91650 0.91581 0.92847 0.85460 0.85608 0.80285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.57 14.32 29.01 0.42 -3.15 15 2 C -0.13 -2.35 9.09 -36.02 -0.33 -2.67 15 3 C -0.09 -1.83 5.06 -27.88 -0.14 -1.97 15 4 C 0.12 2.91 2.18 -92.92 -0.20 2.71 15 5 H 0.06 1.55 8.10 -51.93 -0.42 1.13 15 6 C -0.53 -14.30 8.55 -34.44 -0.29 -14.60 15 7 H 0.06 1.72 7.74 -52.49 -0.41 1.31 15 8 C 0.07 1.83 5.30 -17.82 -0.09 1.74 15 9 N -0.87 -24.94 12.10 55.43 0.67 -24.27 15 10 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 15 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 15 14 C 0.09 2.27 3.93 -35.63 -0.14 2.13 15 15 C -0.24 -5.64 10.44 -39.70 -0.41 -6.05 15 16 C -0.21 -4.44 10.91 -39.70 -0.43 -4.87 15 17 C -0.10 -2.04 12.09 29.42 0.36 -1.69 15 18 O -0.18 -4.29 10.65 5.70 0.06 -4.23 15 19 H 0.09 1.21 8.06 -52.49 -0.42 0.78 15 20 H 0.09 1.38 7.84 -52.49 -0.41 0.97 15 21 H 0.10 1.88 7.77 -52.49 -0.41 1.47 15 22 H 0.06 1.29 7.79 -51.93 -0.40 0.89 15 23 H 0.07 1.38 8.14 -51.93 -0.42 0.96 15 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 25 H 0.13 2.99 8.06 -52.49 -0.42 2.56 15 26 H 0.13 2.26 8.06 -52.49 -0.42 1.84 15 27 H 0.18 2.88 8.06 -52.49 -0.42 2.46 15 LS Contribution 243.40 15.07 3.67 3.67 Total: -1.00 -29.14 243.40 -5.20 -34.33 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -3.30 Total: 2.61 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: -1.28 Total: -28.43 kcal Atomic # 7 Polarization: -24.94 SS G_CDS: 0.67 Total: -24.27 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: 0.06 Total: -4.23 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -29.14 -5.20 -34.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075544958.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.262 kcal (2) G-P(sol) polarization free energy of solvation -29.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds