Wall clock time and date at job start Mon Mar 30 2020 02:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35905 * 116.99539 * 2 1 4 4 C 1.39156 * 119.93273 * 0.02562 * 3 2 1 5 5 C 1.38522 * 120.44347 * 180.27209 * 4 3 2 6 6 C 1.37672 * 120.30292 * 359.44519 * 5 4 3 7 7 C 1.50697 * 120.07425 * 180.25013 * 6 5 4 8 8 C 1.40740 * 119.85330 * 0.57264 * 6 5 4 9 9 C 1.41404 * 120.21420 * 179.67933 * 8 6 5 10 10 H 1.07995 * 120.00304 * 333.77613 * 9 8 6 11 11 C 1.39925 * 119.99513 * 153.77990 * 9 8 6 12 12 N 1.30832 * 120.00595 * 343.92565 * 11 9 8 13 13 Si 1.86805 * 119.99874 * 163.92797 * 11 9 8 14 14 H 1.48499 * 109.46903 * 89.99805 * 13 11 9 15 15 H 1.48501 * 109.47101 * 209.99491 * 13 11 9 16 16 H 1.48502 * 109.47027 * 329.99818 * 13 11 9 17 17 C 1.38094 * 119.92763 * 180.02562 * 3 2 1 18 18 H 1.08997 * 109.47011 * 299.99783 * 1 2 3 19 19 H 1.08996 * 109.47227 * 59.99692 * 1 2 3 20 20 H 1.09003 * 109.46911 * 179.97438 * 1 2 3 21 21 H 1.07998 * 119.77893 * 0.02562 * 4 3 2 22 22 H 1.07996 * 119.85061 * 179.69827 * 5 4 3 23 23 H 1.09000 * 109.47381 * 270.32113 * 7 6 5 24 24 H 1.09001 * 109.46927 * 30.32672 * 7 6 5 25 25 H 1.08999 * 109.46885 * 150.31796 * 7 6 5 26 26 H 0.97000 * 120.00506 * 180.02562 * 12 11 9 27 27 H 1.07997 * 120.15678 * 359.97438 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2866 2.3771 0.0005 5 6 1.9043 3.6169 -0.0051 6 6 3.2780 3.7086 0.0002 7 6 3.9446 5.0602 -0.0004 8 6 4.0584 2.5374 -0.0008 9 6 5.4698 2.6227 -0.0023 10 1 5.9578 3.4928 -0.4159 11 6 6.2342 1.5797 0.5322 12 7 5.6722 0.6860 1.3048 13 14 8.0575 1.4632 0.1425 14 1 8.8304 2.2194 1.1604 15 1 8.4773 0.0389 0.1596 16 1 8.3140 2.0389 -1.2022 17 6 3.4251 1.2816 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 0.2084 2.3150 0.0014 22 1 1.3057 4.5157 -0.0096 23 1 4.1043 5.3862 -1.0281 24 1 3.3077 5.7796 0.5143 25 1 4.9040 4.9922 0.5125 26 1 6.2021 -0.0369 1.6756 27 1 4.0147 0.3768 -0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075544961.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:34 Heat of formation + Delta-G solvation = -32.571339 kcal Electronic energy + Delta-G solvation = -11643.272663 eV Core-core repulsion = 9558.726642 eV Total energy + Delta-G solvation = -2084.546021 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.66953 -36.50643 -33.50386 -30.70595 -29.60158 -27.23537 -25.25620 -24.48438 -21.02773 -19.58942 -17.61456 -16.07086 -15.15200 -14.77236 -14.65928 -13.84978 -13.04812 -12.91806 -12.48149 -12.36305 -11.59234 -11.31446 -11.15668 -11.05893 -10.82541 -10.73156 -10.42713 -9.73709 -9.62968 -9.35424 -9.09270 -7.39441 -6.84580 -6.59971 -4.36818 2.80255 3.04851 3.09599 3.13425 3.23872 3.95324 4.37451 4.64976 5.61515 5.70906 5.78276 5.93758 6.12690 6.36995 6.47051 6.56247 6.71294 6.91293 7.03680 7.13382 7.36787 7.50091 7.83078 7.87963 8.04775 8.13926 8.44184 8.80978 8.91994 9.00082 10.22180 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.038183 B = 0.013334 C = 0.010189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.130550 B = 2099.346313 C = 2747.279587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.331 6.331 3 C 0.124 3.876 4 C -0.317 4.317 5 C -0.065 4.065 6 C -0.220 4.220 7 C -0.081 4.081 8 C 0.139 3.861 9 C -0.457 4.457 10 H 0.082 0.918 11 C 0.075 3.925 12 N -0.787 5.787 13 Si 0.907 3.093 14 H -0.270 1.270 15 H -0.276 1.276 16 H -0.260 1.260 17 C -0.193 4.193 18 H 0.044 0.956 19 H 0.043 0.957 20 H 0.082 0.918 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.039 0.961 24 H 0.036 0.964 25 H 0.060 0.940 26 H 0.281 0.719 27 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.942 0.749 -1.443 3.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.245 6.245 3 C 0.081 3.919 4 C -0.337 4.337 5 C -0.083 4.083 6 C -0.222 4.222 7 C -0.138 4.138 8 C 0.136 3.864 9 C -0.487 4.487 10 H 0.100 0.900 11 C -0.143 4.143 12 N -0.412 5.412 13 Si 0.732 3.268 14 H -0.195 1.195 15 H -0.201 1.201 16 H -0.184 1.184 17 C -0.213 4.213 18 H 0.063 0.937 19 H 0.062 0.938 20 H 0.100 0.900 21 H 0.111 0.889 22 H 0.108 0.892 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.796 0.355 -1.292 3.101 hybrid contribution 0.421 -0.019 -0.027 0.423 sum -2.375 0.336 -1.319 2.737 Atomic orbital electron populations 1.22736 0.80942 1.01734 1.00440 1.86002 1.19370 1.29193 1.89963 1.18950 0.92523 0.82424 0.98041 1.20419 0.97139 0.92674 1.23449 1.20175 0.93888 0.95091 0.99169 1.19743 0.92698 0.94744 1.14973 1.20354 1.00020 0.93915 0.99484 1.17201 0.92952 0.89394 0.86845 1.19547 0.90952 1.03375 1.34790 0.89952 1.25952 1.01187 0.94454 0.92749 1.69845 1.38383 1.11360 1.21644 0.86332 0.82049 0.78318 0.80144 1.19501 1.20103 1.18424 1.20583 0.89261 0.99202 1.12235 0.93749 0.93809 0.89992 0.88865 0.89235 0.94206 0.94533 0.92071 0.90822 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.81 101.05 0.99 1.63 15 2 O -0.33 -7.63 10.49 -19.44 -0.20 -7.83 15 3 C 0.12 3.16 6.67 -39.29 -0.26 2.90 15 4 C -0.32 -7.45 9.05 -39.14 -0.35 -7.81 15 5 C -0.06 -1.52 9.67 -39.68 -0.38 -1.90 15 6 C -0.22 -5.48 5.94 -103.89 -0.62 -6.09 15 7 C -0.08 -1.71 9.40 36.00 0.34 -1.37 15 8 C 0.14 3.79 5.56 -106.84 -0.59 3.19 15 9 C -0.46 -12.15 8.11 -37.75 -0.31 -12.46 15 10 H 0.08 2.07 6.89 -52.49 -0.36 1.71 15 11 C 0.08 1.91 5.16 -17.35 -0.09 1.82 15 12 N -0.79 -20.88 10.97 55.55 0.61 -20.27 15 13 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 15 14 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15 15 H -0.28 -5.61 7.11 56.52 0.40 -5.21 15 16 H -0.26 -5.33 7.11 56.52 0.40 -4.93 15 17 C -0.19 -5.33 8.61 -38.73 -0.33 -5.66 15 18 H 0.04 0.72 7.65 -51.93 -0.40 0.32 15 19 H 0.04 0.69 7.65 -51.93 -0.40 0.29 15 20 H 0.08 1.12 8.14 -51.93 -0.42 0.69 15 21 H 0.09 1.92 6.27 -52.49 -0.33 1.59 15 22 H 0.09 1.82 8.06 -52.49 -0.42 1.40 15 23 H 0.04 0.78 8.14 -51.93 -0.42 0.35 15 24 H 0.04 0.68 8.09 -51.93 -0.42 0.26 15 25 H 0.06 1.31 6.78 -51.93 -0.35 0.96 15 26 H 0.28 6.78 8.30 -40.82 -0.34 6.44 15 27 H 0.12 3.60 6.22 -52.49 -0.33 3.27 15 LS Contribution 232.55 15.07 3.50 3.50 Total: -1.00 -28.82 232.55 -5.72 -34.54 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -2.99 Total: 2.08 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: -1.61 Total: -25.76 kcal Atomic # 7 Polarization: -20.88 SS G_CDS: 0.61 Total: -20.27 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -0.20 Total: -7.83 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -28.82 -5.72 -34.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075544961.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.966 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds