Wall clock time and date at job start Mon Mar 30 2020 02:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35905 * 116.99539 * 2 1 4 4 C 1.39156 * 119.93273 * 0.02562 * 3 2 1 5 5 C 1.38522 * 120.44347 * 180.27209 * 4 3 2 6 6 C 1.37672 * 120.30292 * 359.44519 * 5 4 3 7 7 C 1.50697 * 120.07425 * 180.25013 * 6 5 4 8 8 C 1.40740 * 119.85330 * 0.57264 * 6 5 4 9 9 C 1.41404 * 120.21420 * 179.67933 * 8 6 5 10 10 H 1.07995 * 120.00304 * 333.77613 * 9 8 6 11 11 C 1.39925 * 119.99513 * 153.77990 * 9 8 6 12 12 N 1.30832 * 120.00595 * 343.92565 * 11 9 8 13 13 Si 1.86805 * 119.99874 * 163.92797 * 11 9 8 14 14 H 1.48499 * 109.46903 * 89.99805 * 13 11 9 15 15 H 1.48501 * 109.47101 * 209.99491 * 13 11 9 16 16 H 1.48502 * 109.47027 * 329.99818 * 13 11 9 17 17 C 1.38094 * 119.92763 * 180.02562 * 3 2 1 18 18 H 1.08997 * 109.47011 * 299.99783 * 1 2 3 19 19 H 1.08996 * 109.47227 * 59.99692 * 1 2 3 20 20 H 1.09003 * 109.46911 * 179.97438 * 1 2 3 21 21 H 1.07998 * 119.77893 * 0.02562 * 4 3 2 22 22 H 1.07996 * 119.85061 * 179.69827 * 5 4 3 23 23 H 1.09000 * 109.47381 * 270.32113 * 7 6 5 24 24 H 1.09001 * 109.46927 * 30.32672 * 7 6 5 25 25 H 1.08999 * 109.46885 * 150.31796 * 7 6 5 26 26 H 0.97000 * 120.00506 * 180.02562 * 12 11 9 27 27 H 1.07997 * 120.15678 * 359.97438 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2866 2.3771 0.0005 5 6 1.9043 3.6169 -0.0051 6 6 3.2780 3.7086 0.0002 7 6 3.9446 5.0602 -0.0004 8 6 4.0584 2.5374 -0.0008 9 6 5.4698 2.6227 -0.0023 10 1 5.9578 3.4928 -0.4159 11 6 6.2342 1.5797 0.5322 12 7 5.6722 0.6860 1.3048 13 14 8.0575 1.4632 0.1425 14 1 8.8304 2.2194 1.1604 15 1 8.4773 0.0389 0.1596 16 1 8.3140 2.0389 -1.2022 17 6 3.4251 1.2816 -0.0005 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 0.2084 2.3150 0.0014 22 1 1.3057 4.5157 -0.0096 23 1 4.1043 5.3862 -1.0281 24 1 3.3077 5.7796 0.5143 25 1 4.9040 4.9922 0.5125 26 1 6.2021 -0.0369 1.6756 27 1 4.0147 0.3768 -0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075544961.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:33 Heat of formation + Delta-G solvation = -49.605793 kcal Electronic energy + Delta-G solvation = -11644.011332 eV Core-core repulsion = 9558.726642 eV Total energy + Delta-G solvation = -2085.284691 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.47260 -38.31203 -35.40480 -32.49987 -31.50905 -28.84220 -27.02285 -26.27770 -22.93869 -21.42591 -19.45638 -17.95710 -16.91809 -16.41960 -16.34074 -15.71080 -14.82508 -14.61382 -14.19034 -14.13895 -13.33864 -12.94134 -12.80354 -12.73945 -12.62010 -12.37786 -12.08023 -11.56571 -11.40969 -11.19510 -10.95664 -9.35119 -8.73974 -8.47717 -6.35901 0.97192 1.12545 1.39446 1.51155 1.56342 2.21873 2.71328 2.79779 3.69315 4.30422 4.45566 4.48807 4.54887 4.71930 4.74974 4.85135 5.06870 5.10160 5.20491 5.36696 5.41060 5.60073 5.95050 5.97454 6.15408 6.22497 6.51735 6.91700 6.97460 7.09078 8.35639 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.038183 B = 0.013334 C = 0.010189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.130550 B = 2099.346313 C = 2747.279587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.354 6.354 3 C 0.117 3.883 4 C -0.316 4.316 5 C -0.067 4.067 6 C -0.239 4.239 7 C -0.076 4.076 8 C 0.108 3.892 9 C -0.487 4.487 10 H 0.088 0.912 11 C 0.030 3.970 12 N -0.825 5.825 13 Si 0.984 3.016 14 H -0.259 1.259 15 H -0.271 1.271 16 H -0.256 1.256 17 C -0.231 4.231 18 H 0.053 0.947 19 H 0.057 0.943 20 H 0.116 0.884 21 H 0.126 0.874 22 H 0.127 0.873 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.286 0.714 27 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.557 1.659 -1.723 4.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.269 6.269 3 C 0.073 3.927 4 C -0.336 4.336 5 C -0.085 4.085 6 C -0.240 4.240 7 C -0.132 4.132 8 C 0.105 3.895 9 C -0.516 4.516 10 H 0.106 0.894 11 C -0.185 4.185 12 N -0.451 5.451 13 Si 0.804 3.196 14 H -0.184 1.184 15 H -0.195 1.195 16 H -0.179 1.179 17 C -0.252 4.252 18 H 0.072 0.928 19 H 0.076 0.924 20 H 0.134 0.866 21 H 0.144 0.856 22 H 0.144 0.856 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.438 1.270 -1.572 3.988 hybrid contribution 0.428 -0.329 0.066 0.545 sum -3.009 0.941 -1.506 3.494 Atomic orbital electron populations 1.23137 0.77631 1.04510 1.01465 1.85963 1.22806 1.28432 1.89713 1.19086 0.92227 0.83990 0.97364 1.20802 0.98736 0.92031 1.22029 1.20622 0.93725 0.96497 0.97679 1.20229 0.93704 0.95581 1.14526 1.20336 0.99690 0.92586 1.00605 1.17619 0.93947 0.90289 0.87615 1.19835 0.91366 1.04465 1.35925 0.89449 1.26883 1.06062 0.93589 0.91919 1.69933 1.40412 1.12122 1.22638 0.85188 0.75797 0.78522 0.80104 1.18359 1.19530 1.17932 1.20550 0.90593 0.98666 1.15362 0.92827 0.92447 0.86579 0.85636 0.85552 0.92784 0.91867 0.93159 0.90319 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 9.81 113.37 1.11 1.97 15 2 O -0.35 -16.25 10.49 -92.49 -0.97 -17.22 15 3 C 0.12 6.00 6.67 22.46 0.15 6.15 15 4 C -0.32 -14.30 9.05 22.56 0.20 -14.10 15 5 C -0.07 -2.99 9.67 22.20 0.21 -2.78 15 6 C -0.24 -11.73 5.94 -19.39 -0.12 -11.84 15 7 C -0.08 -3.06 9.40 71.24 0.67 -2.39 15 8 C 0.11 6.03 5.56 -21.30 -0.12 5.91 15 9 C -0.49 -26.50 8.11 23.46 0.19 -26.31 15 10 H 0.09 4.47 6.89 -2.91 -0.02 4.45 15 11 C 0.03 1.57 5.16 85.25 0.44 2.01 15 12 N -0.83 -45.35 10.97 21.82 0.24 -45.11 15 13 Si 0.98 38.92 29.59 68.60 2.03 40.95 15 14 H -0.26 -9.73 7.11 99.48 0.71 -9.03 15 15 H -0.27 -10.35 7.11 99.48 0.71 -9.64 15 16 H -0.26 -9.81 7.11 99.48 0.71 -9.11 15 17 C -0.23 -13.27 8.61 22.82 0.20 -13.07 15 18 H 0.05 1.59 7.65 -2.39 -0.02 1.57 15 19 H 0.06 1.65 7.65 -2.39 -0.02 1.63 15 20 H 0.12 2.83 8.14 -2.39 -0.02 2.81 15 21 H 0.13 4.75 6.27 -2.91 -0.02 4.73 15 22 H 0.13 4.62 8.06 -2.91 -0.02 4.60 15 23 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15 24 H 0.06 2.18 8.09 -2.39 -0.02 2.16 15 25 H 0.05 2.11 6.78 -2.39 -0.02 2.10 15 26 H 0.29 14.28 8.30 -92.71 -0.77 13.51 15 27 H 0.10 5.97 6.22 -2.91 -0.02 5.95 15 Total: -1.00 -63.51 232.55 5.40 -58.11 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 1.16 Total: 17.72 kcal Atomic # 6 Polarization: -57.39 SS G_CDS: 2.94 Total: -54.45 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.24 Total: -45.11 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.97 Total: -17.22 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -63.51 5.40 -58.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075544961.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.503 kcal (2) G-P(sol) polarization free energy of solvation -63.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds