Wall clock time and date at job start Mon Mar 30 2020 02:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86800 * 119.99768 * 2 1 4 4 H 1.48493 * 109.47307 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47124 * 300.00349 * 3 2 1 6 6 H 1.48504 * 109.47207 * 60.00412 * 3 2 1 7 7 C 1.40230 * 120.00546 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00656 * 179.97438 * 7 2 1 9 9 C 1.39995 * 119.99845 * 359.97438 * 7 2 1 10 10 N 1.33190 * 125.93204 * 0.02562 * 9 7 2 11 11 C 1.32258 * 109.17724 * 180.02562 * 10 9 7 12 12 C 1.36697 * 108.49979 * 0.04256 * 11 10 9 13 13 N 1.35669 * 107.46839 * 359.64571 * 12 11 10 14 14 H 0.96997 * 126.64614 * 180.38355 * 13 12 11 15 15 C 1.50730 * 124.26900 * 179.86084 * 12 11 10 16 16 C 1.53394 * 108.34105 * 343.57372 * 15 12 11 17 17 C 1.53092 * 109.49448 * 49.88706 * 16 15 12 18 18 C 1.50982 * 127.77902 * 180.10776 * 11 10 9 19 19 H 0.96998 * 120.00377 * 359.97438 * 1 2 3 20 20 H 1.08995 * 109.69164 * 223.86372 * 15 12 11 21 21 H 1.09004 * 109.69458 * 103.28062 * 15 12 11 22 22 H 1.08998 * 109.46398 * 289.88270 * 16 15 12 23 23 H 1.08991 * 109.47001 * 169.89350 * 16 15 12 24 24 H 1.09007 * 109.44951 * 169.40119 * 17 16 15 25 25 H 1.08997 * 109.45342 * 49.47785 * 17 16 15 26 26 H 1.09005 * 109.68511 * 282.93615 * 18 11 10 27 27 H 1.09003 * 109.68358 * 43.45209 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8821 2.3965 1.2126 7 6 2.0081 -1.2144 -0.0005 8 1 3.0881 -1.2144 -0.0010 9 6 1.3082 -2.4268 -0.0005 10 7 -0.0165 -2.5645 -0.0005 11 6 -0.3195 -3.8520 0.0000 12 6 0.8431 -4.5711 0.0014 13 7 1.8702 -3.6848 -0.0064 14 1 2.8169 -3.8958 -0.0127 15 6 0.9095 -6.0769 0.0054 16 6 -0.4642 -6.6196 0.4192 17 6 -1.5533 -5.9474 -0.4208 18 6 -1.6929 -4.4790 -0.0020 19 1 -0.4850 0.8400 0.0004 20 1 1.6653 -6.4093 0.7170 21 1 1.1608 -6.4362 -0.9926 22 1 -0.6360 -6.4067 1.4743 23 1 -0.4932 -7.6970 0.2567 24 1 -2.5017 -6.4613 -0.2638 25 1 -1.2827 -5.9999 -1.4753 26 1 -2.1242 -4.4216 0.9974 27 1 -2.3350 -3.9543 -0.7095 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076095394.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:27 Heat of formation + Delta-G solvation = 8.219857 kcal Electronic energy + Delta-G solvation = -11750.537369 eV Core-core repulsion = 9700.052938 eV Total energy + Delta-G solvation = -2050.484431 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.99060 -37.23576 -35.12349 -33.31571 -30.45789 -30.07530 -27.31021 -23.62057 -22.52852 -21.92822 -19.64041 -18.67832 -17.66214 -16.50300 -15.91013 -14.97461 -14.78052 -14.59700 -14.13432 -13.88955 -13.54240 -12.96445 -12.92459 -12.56799 -12.46394 -11.84419 -11.66675 -11.49319 -11.47022 -11.08812 -10.03786 -9.69570 -8.76104 -8.32480 -6.24113 1.35151 1.42777 1.59126 1.80668 2.27320 2.71692 3.01668 3.60596 4.05996 4.13010 4.15284 4.47580 4.62205 4.79820 4.87860 4.96472 5.01884 5.13476 5.20395 5.24030 5.36212 5.55453 5.60198 5.84223 6.15684 6.34505 6.74203 7.04085 7.54365 8.32621 8.64075 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.079506 B = 0.010268 C = 0.009237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.088112 B = 2726.334032 C = 3030.495545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.030 3.970 3 Si 0.997 3.003 4 H -0.253 1.253 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.498 4.498 8 H 0.088 0.912 9 C 0.332 3.668 10 N -0.555 5.555 11 C -0.034 4.034 12 C -0.135 4.135 13 N -0.609 5.609 14 H 0.408 0.592 15 C -0.019 4.019 16 C -0.103 4.103 17 C -0.103 4.103 18 C -0.028 4.028 19 H 0.275 0.725 20 H 0.067 0.933 21 H 0.067 0.933 22 H 0.055 0.945 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.253 -8.297 0.010 8.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.189 4.189 3 Si 0.817 3.183 4 H -0.176 1.176 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.538 4.538 8 H 0.106 0.894 9 C 0.086 3.914 10 N -0.278 5.278 11 C -0.167 4.167 12 C -0.249 4.249 13 N -0.216 5.216 14 H 0.244 0.756 15 C -0.058 4.058 16 C -0.141 4.141 17 C -0.141 4.141 18 C -0.066 4.066 19 H 0.085 0.915 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.074 0.926 23 H 0.116 0.884 24 H 0.109 0.891 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.406 -7.617 0.007 7.628 hybrid contribution 1.316 0.361 -0.001 1.364 sum 1.721 -7.256 0.006 7.458 Atomic orbital electron populations 1.70177 1.08985 1.28683 1.34265 1.26770 0.95611 1.04078 0.92410 0.84956 0.79082 0.75764 0.78451 1.17597 1.19448 1.19433 1.18575 0.94098 0.88480 1.52606 0.89395 1.20614 0.87990 0.85027 0.97803 1.70844 1.11567 1.16949 1.28420 1.21378 0.95748 0.90919 1.08618 1.21170 0.88238 0.93675 1.21778 1.42996 1.07996 1.06649 1.63970 0.75587 1.19899 0.98925 0.85955 1.00999 1.21485 0.92801 1.00338 0.99477 1.21501 0.99933 0.93033 0.99655 1.19889 0.90686 0.95777 1.00238 0.91517 0.91455 0.91482 0.92641 0.88391 0.89088 0.92489 0.92366 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.23 11.89 21.88 0.26 -46.97 15 2 C 0.03 1.63 5.50 85.35 0.47 2.10 15 3 Si 1.00 40.74 29.56 68.60 2.03 42.77 15 4 H -0.25 -9.69 7.11 99.48 0.71 -8.98 15 5 H -0.27 -10.63 7.11 99.48 0.71 -9.92 15 6 H -0.27 -10.62 7.11 99.48 0.71 -9.91 15 7 C -0.50 -28.48 9.45 23.18 0.22 -28.26 15 8 H 0.09 4.59 7.85 -2.91 -0.02 4.56 15 9 C 0.33 19.56 7.62 133.45 1.02 20.58 15 10 N -0.55 -34.29 9.39 -181.59 -1.71 -35.99 15 11 C -0.03 -1.76 6.97 42.22 0.29 -1.46 15 12 C -0.13 -6.21 7.10 41.61 0.30 -5.92 15 13 N -0.61 -29.90 6.25 -179.69 -1.12 -31.03 15 14 H 0.41 16.88 8.96 -92.71 -0.83 16.05 15 15 C -0.02 -0.63 6.30 29.99 0.19 -0.45 15 16 C -0.10 -2.84 5.90 30.76 0.18 -2.66 15 17 C -0.10 -3.11 5.88 30.74 0.18 -2.93 15 18 C -0.03 -1.14 6.30 30.05 0.19 -0.95 15 19 H 0.27 14.80 8.29 -92.71 -0.77 14.04 15 20 H 0.07 1.98 8.14 -2.39 -0.02 1.96 15 21 H 0.07 2.01 8.14 -2.39 -0.02 1.99 15 22 H 0.05 1.60 8.11 -2.39 -0.02 1.58 15 23 H 0.10 1.95 8.14 -2.39 -0.02 1.93 15 24 H 0.09 2.12 8.14 -2.38 -0.02 2.10 15 25 H 0.06 1.74 8.11 -2.39 -0.02 1.72 15 26 H 0.06 2.33 8.14 -2.38 -0.02 2.31 15 27 H 0.05 2.13 8.14 -2.39 -0.02 2.11 15 Total: -1.00 -72.46 229.62 2.84 -69.62 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.34 Total: 21.53 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 3.04 Total: -19.93 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -2.57 Total: -113.99 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -72.46 2.84 -69.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076095394.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.845 kcal (2) G-P(sol) polarization free energy of solvation -72.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds