Wall clock time and date at job start Mon Mar 30 2020 02:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34006 * 125.14629 * 2 1 4 4 C 1.47290 * 106.08888 * 180.13849 * 3 2 1 5 5 C 1.41381 * 127.37070 * 179.86825 * 4 3 2 6 6 H 1.08003 * 120.00043 * 162.59250 * 5 4 3 7 7 C 1.39702 * 120.00142 * 342.59364 * 5 4 3 8 8 N 1.31025 * 119.99941 * 337.33523 * 7 5 4 9 9 Si 1.86797 * 119.99954 * 157.34036 * 7 5 4 10 10 H 1.48500 * 109.46896 * 179.97438 * 9 7 5 11 11 H 1.48506 * 109.47166 * 299.99862 * 9 7 5 12 12 H 1.48496 * 109.47325 * 59.99864 * 9 7 5 13 13 C 1.38968 * 105.25174 * 359.60619 * 4 3 2 14 14 C 1.50706 * 126.05262 * 180.26098 * 13 4 3 15 15 C 1.53005 * 117.49862 * 188.74540 * 14 13 4 16 16 C 1.53008 * 117.49505 * 120.08734 * 14 13 4 17 17 O 1.33871 * 107.89733 * 0.23937 * 13 4 3 18 18 H 1.08996 * 109.46852 * 180.28235 * 1 2 3 19 19 H 1.08997 * 109.46884 * 300.28163 * 1 2 3 20 20 H 1.08997 * 109.47389 * 60.28267 * 1 2 3 21 21 H 1.07997 * 126.95750 * 359.97438 * 3 2 1 22 22 H 0.97003 * 119.99761 * 353.97185 * 8 7 5 23 23 H 1.08997 * 115.55185 * 334.41761 * 14 13 4 24 24 H 1.08998 * 117.49490 * 359.97438 * 15 14 13 25 25 H 1.08994 * 117.49689 * 145.02249 * 15 14 13 26 26 H 1.09001 * 117.49046 * 214.97643 * 16 14 13 27 27 H 1.08993 * 117.50449 * 359.97438 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2784 1.0957 0.0000 4 6 3.6706 0.6148 -0.0034 5 6 4.8486 1.3966 -0.0072 6 1 5.7928 0.9519 0.2703 7 6 4.7912 2.7445 -0.3701 8 7 3.8033 3.1819 -1.1113 9 14 6.1230 3.9230 0.2014 10 1 5.8335 5.2850 -0.3148 11 1 6.1546 3.9521 1.6859 12 1 7.4400 3.4688 -0.3129 13 6 3.5784 -0.7718 0.0040 14 6 4.7353 -1.7376 0.0096 15 6 4.4180 -3.2212 -0.1888 16 6 4.8411 -2.7063 1.1893 17 8 2.2800 -1.0977 0.0059 18 1 -0.3633 -1.0276 0.0051 19 1 -0.3633 0.5182 0.8874 20 1 -0.3634 0.5094 -0.8925 21 1 1.9466 2.1235 -0.0004 22 1 3.1603 2.5566 -1.4807 23 1 5.6647 -1.3603 -0.4167 24 1 3.3725 -3.4986 -0.3229 25 1 5.1389 -3.8199 -0.7454 26 1 5.8403 -2.9665 1.5386 27 1 4.0743 -2.6447 1.9615 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000077082437.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:48 Heat of formation + Delta-G solvation = -4.211698 kcal Electronic energy + Delta-G solvation = -11651.017880 eV Core-core repulsion = 9567.701625 eV Total energy + Delta-G solvation = -2083.316255 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -42.53820 -37.76472 -36.16019 -33.11652 -31.97707 -27.99498 -26.75336 -23.24924 -22.84608 -22.17832 -20.82072 -18.64700 -17.19973 -16.57790 -16.20949 -15.84814 -15.31720 -14.65404 -14.06421 -13.72429 -13.64078 -13.38386 -12.89621 -12.76354 -12.39714 -12.17825 -11.93929 -11.60441 -11.50615 -11.21070 -10.90019 -10.07330 -9.19759 -8.77607 -6.27908 1.10450 1.48195 1.51556 1.79669 2.05422 2.38576 2.48518 3.02539 3.31708 3.84533 4.00159 4.18490 4.28270 4.52299 4.58344 4.69669 4.72006 4.87511 4.90041 4.96713 5.23177 5.25968 5.31799 5.63424 5.83712 5.99882 6.07309 6.60974 6.97062 7.08806 8.20252 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.031681 B = 0.014148 C = 0.010271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.603833 B = 1978.639793 C = 2725.419711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.025 4.025 3 C -0.284 4.284 4 C -0.009 4.009 5 C -0.549 4.549 6 H 0.066 0.934 7 C -0.003 4.003 8 N -0.847 5.847 9 Si 1.120 2.880 10 H -0.272 1.272 11 H -0.267 1.267 12 H -0.259 1.259 13 C -0.199 4.199 14 C -0.054 4.054 15 C -0.163 4.163 16 C -0.171 4.171 17 O -0.200 6.200 18 H 0.085 0.915 19 H 0.091 0.909 20 H 0.089 0.911 21 H 0.121 0.879 22 H 0.278 0.722 23 H 0.108 0.892 24 H 0.083 0.917 25 H 0.120 0.880 26 H 0.118 0.882 27 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.750 -5.653 2.365 6.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.075 4.075 3 C -0.305 4.305 4 C -0.012 4.012 5 C -0.579 4.579 6 H 0.084 0.916 7 C -0.215 4.215 8 N -0.474 5.474 9 Si 0.938 3.062 10 H -0.197 1.197 11 H -0.192 1.192 12 H -0.183 1.183 13 C -0.246 4.246 14 C -0.072 4.072 15 C -0.200 4.200 16 C -0.208 4.208 17 O -0.101 6.101 18 H 0.104 0.896 19 H 0.110 0.890 20 H 0.108 0.892 21 H 0.139 0.861 22 H 0.090 0.910 23 H 0.126 0.874 24 H 0.102 0.898 25 H 0.139 0.861 26 H 0.136 0.864 27 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.440 -4.354 2.318 4.953 hybrid contribution -0.599 -1.200 -0.137 1.348 sum -1.039 -5.554 2.181 6.057 Atomic orbital electron populations 1.20329 0.82693 1.04387 1.04084 1.22669 0.95142 0.84200 1.05486 1.22560 0.93919 0.98004 1.15994 1.19519 0.93181 0.91725 0.96760 1.19859 0.94330 0.97604 1.46125 0.91611 1.28334 1.01813 0.99598 0.91761 1.70641 1.13131 1.40501 1.23077 0.82968 0.72515 0.73522 0.77218 1.19698 1.19180 1.18311 1.21583 0.81198 0.93139 1.28674 1.19812 0.93790 0.88752 1.04882 1.22969 1.02343 0.94881 0.99775 1.23084 1.03103 1.03179 0.91388 1.83291 1.17036 1.34462 1.75289 0.89564 0.88999 0.89192 0.86127 0.90972 0.87400 0.89824 0.86134 0.86362 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.89 10.39 71.24 0.74 -1.15 15 2 C -0.02 -1.16 7.25 24.72 0.18 -0.98 15 3 C -0.28 -15.43 8.95 23.69 0.21 -15.22 15 4 C -0.01 -0.54 5.74 -19.95 -0.11 -0.65 15 5 C -0.55 -32.13 9.10 23.40 0.21 -31.91 15 6 H 0.07 3.75 7.94 -2.91 -0.02 3.73 15 7 C 0.00 -0.18 5.32 85.17 0.45 0.27 15 8 N -0.85 -49.24 12.75 21.79 0.28 -48.97 15 9 Si 1.12 46.54 29.99 68.60 2.06 48.60 15 10 H -0.27 -11.01 7.11 99.48 0.71 -10.31 15 11 H -0.27 -10.51 7.11 99.48 0.71 -9.80 15 12 H -0.26 -9.83 7.11 99.48 0.71 -9.12 15 13 C -0.20 -10.51 6.96 25.86 0.18 -10.33 15 14 C -0.05 -2.36 6.03 -11.53 -0.07 -2.43 15 15 C -0.16 -5.52 10.17 30.62 0.31 -5.21 15 16 C -0.17 -5.94 10.24 30.62 0.31 -5.63 15 17 O -0.20 -10.04 10.25 2.05 0.02 -10.02 15 18 H 0.09 2.37 8.14 -2.39 -0.02 2.35 15 19 H 0.09 2.60 8.14 -2.39 -0.02 2.58 15 20 H 0.09 2.60 8.14 -2.39 -0.02 2.58 15 21 H 0.12 6.64 7.01 -2.91 -0.02 6.62 15 22 H 0.28 16.76 6.11 -92.71 -0.57 16.19 15 23 H 0.11 4.73 8.14 -2.39 -0.02 4.71 15 24 H 0.08 2.94 7.98 -2.39 -0.02 2.92 15 25 H 0.12 3.27 8.14 -2.39 -0.02 3.25 15 26 H 0.12 3.37 8.14 -2.39 -0.02 3.35 15 27 H 0.08 2.87 8.14 -2.39 -0.02 2.85 15 Total: -1.00 -67.87 240.49 6.13 -61.74 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 1.36 Total: 21.89 kcal Atomic # 6 Polarization: -75.66 SS G_CDS: 2.42 Total: -73.24 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.28 Total: -48.97 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.02 Total: -10.02 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.06 Total: 48.60 kcal Total: -67.87 6.13 -61.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077082437.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.525 kcal (2) G-P(sol) polarization free energy of solvation -67.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds