Wall clock time and date at job start Mon Mar 30 2020 01:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39452 * 120.86224 * 10.11076 * 3 2 1 5 5 C 1.40517 * 118.85528 * 180.24129 * 4 3 2 6 6 C 1.41318 * 119.72642 * 179.77393 * 5 4 3 7 7 H 1.07997 * 120.00091 * 6.80744 * 6 5 4 8 8 C 1.40023 * 120.00334 * 186.80595 * 6 5 4 9 9 N 1.30756 * 120.00246 * 182.55279 * 8 6 5 10 10 Si 1.86799 * 119.99757 * 2.55607 * 8 6 5 11 11 H 1.48505 * 109.47221 * 179.97438 * 10 8 6 12 12 H 1.48498 * 109.47580 * 300.00060 * 10 8 6 13 13 H 1.48500 * 109.47250 * 59.99947 * 10 8 6 14 14 N 1.33659 * 120.54957 * 359.49345 * 5 4 3 15 15 C 1.31313 * 121.89371 * 0.25306 * 14 5 4 16 16 C 1.39034 * 121.10514 * 0.02562 * 15 14 5 17 17 F 1.35100 * 120.34163 * 180.02562 * 16 15 14 18 18 H 1.08006 * 120.56961 * 359.97438 * 4 3 2 19 19 H 0.96999 * 119.99872 * 354.85577 * 9 8 6 20 20 H 1.07999 * 119.44724 * 179.97438 * 15 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2838 -1.1775 -0.2101 5 6 4.6881 -1.1293 -0.1964 6 6 5.4319 -2.3131 -0.4025 7 1 4.9269 -3.2271 -0.6783 8 6 6.8237 -2.3012 -0.2493 9 7 7.5171 -3.3836 -0.4886 10 14 7.6898 -0.7389 0.2970 11 1 9.1514 -0.9872 0.3829 12 1 7.4279 0.3422 -0.6868 13 1 7.1786 -0.3296 1.6298 14 7 5.3263 0.0278 0.0045 15 6 4.6779 1.1528 0.1998 16 6 3.2881 1.1890 0.2067 17 9 2.6367 2.3553 0.4086 18 1 2.7678 -2.1116 -0.3763 19 1 7.0625 -4.2141 -0.6994 20 1 5.2336 2.0652 0.3586 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079066628.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:04 Heat of formation + Delta-G solvation = -19.404300 kcal Electronic energy + Delta-G solvation = -10884.266265 eV Core-core repulsion = 8573.290561 eV Total energy + Delta-G solvation = -2310.975704 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 192.039 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -49.55213 -40.63418 -37.85980 -35.82174 -33.46771 -32.26835 -27.34708 -25.72571 -23.47053 -21.10960 -19.35561 -18.21937 -17.80789 -16.58217 -16.52037 -15.25803 -15.09961 -14.86296 -14.66588 -14.42512 -14.29259 -14.03398 -13.91054 -13.07310 -12.49656 -11.97598 -11.69905 -11.30623 -10.61544 -9.91948 -9.75849 -9.37320 -6.88351 -0.25235 0.37716 1.40592 1.64807 1.72507 2.00806 2.15372 2.48997 2.60355 2.67298 3.35806 3.43689 3.81553 4.21384 4.33803 4.80738 4.84921 5.09440 5.33530 5.51640 5.90082 6.11291 6.21948 6.47992 7.29230 7.90121 Molecular weight = 192.04amu Principal moments of inertia in cm(-1) A = 0.055349 B = 0.012940 C = 0.010556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.763475 B = 2163.367823 C = 2651.975689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.282 3.718 3 C 0.017 3.983 4 C -0.177 4.177 5 C 0.228 3.772 6 C -0.473 4.473 7 H 0.082 0.918 8 C 0.016 3.984 9 N -0.811 5.811 10 Si 1.174 2.826 11 H -0.331 1.331 12 H -0.267 1.267 13 H -0.285 1.285 14 N -0.561 5.561 15 C 0.150 3.850 16 C -0.072 4.072 17 F -0.147 7.147 18 H 0.140 0.860 19 H 0.287 0.713 20 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.416 5.314 1.123 5.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.033 4.033 3 C 0.008 3.992 4 C -0.203 4.203 5 C 0.106 3.894 6 C -0.504 4.504 7 H 0.100 0.900 8 C -0.203 4.203 9 N -0.432 5.432 10 Si 1.005 2.995 11 H -0.264 1.264 12 H -0.194 1.194 13 H -0.212 1.212 14 N -0.279 5.279 15 C -0.012 4.012 16 C -0.098 4.098 17 F -0.126 7.126 18 H 0.158 0.842 19 H 0.098 0.902 20 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -0.875 5.788 1.344 6.006 hybrid contribution -2.291 -1.054 -0.410 2.555 sum -3.166 4.734 0.934 5.771 Atomic orbital electron populations 1.81134 1.12295 1.08700 1.09638 1.25552 0.92441 0.92465 0.92817 1.16084 0.83873 0.94681 1.04597 1.21816 0.93786 0.96603 1.08113 1.18623 0.89901 0.91207 0.89665 1.20928 0.94716 0.95747 1.39050 0.89964 1.28611 0.95883 1.05972 0.89832 1.70667 1.41174 1.02024 1.29366 0.81605 0.69607 0.69969 0.78297 1.26446 1.19360 1.21247 1.66673 1.38305 0.99229 1.23734 1.22787 0.88908 0.97334 0.92219 1.18061 0.91233 0.80621 1.19875 1.91385 1.81520 1.45714 1.93981 0.84220 0.90193 0.79549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -16.55 18.54 19.00 0.35 -16.20 14 2 C 0.28 10.22 15.09 88.33 1.33 11.55 14 3 C 0.02 0.63 5.76 -21.19 -0.12 0.51 14 4 C -0.18 -6.85 9.58 23.12 0.22 -6.62 14 5 C 0.23 9.96 6.39 40.18 0.26 10.21 14 6 C -0.47 -22.30 9.57 23.46 0.22 -22.08 14 7 H 0.08 3.88 8.05 -2.91 -0.02 3.85 14 8 C 0.02 0.79 5.52 85.29 0.47 1.26 14 9 N -0.81 -40.07 13.65 21.84 0.30 -39.78 14 10 Si 1.17 49.48 25.55 68.60 1.75 51.23 14 11 H -0.33 -14.10 7.11 99.48 0.71 -13.39 14 12 H -0.27 -10.81 6.67 99.48 0.66 -10.14 14 13 H -0.28 -11.74 7.11 99.48 0.71 -11.03 14 14 N -0.56 -23.45 4.51 -189.10 -0.85 -24.30 14 15 C 0.15 5.30 11.17 84.96 0.95 6.25 14 16 C -0.07 -2.57 7.35 23.01 0.17 -2.40 14 17 F -0.15 -5.08 16.88 44.97 0.76 -4.32 14 18 H 0.14 4.94 8.06 -2.91 -0.02 4.91 14 19 H 0.29 13.60 8.72 -92.71 -0.81 12.79 14 20 H 0.19 5.13 8.06 -2.91 -0.02 5.11 14 Total: -1.00 -49.61 203.32 7.01 -42.60 By element: Atomic # 1 Polarization: -9.10 SS G_CDS: 1.20 Total: -7.90 kcal Atomic # 6 Polarization: -4.83 SS G_CDS: 3.50 Total: -1.32 kcal Atomic # 7 Polarization: -80.08 SS G_CDS: -0.20 Total: -80.28 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.76 Total: -4.32 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 1.75 Total: 51.23 kcal Total: -49.61 7.01 -42.60 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079066628.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.191 kcal (2) G-P(sol) polarization free energy of solvation -49.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds