Wall clock time and date at job start Mon Mar 30 2020 02:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00024 * 2 1 4 4 H 1.48502 * 109.47293 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47244 * 300.00876 * 3 2 1 6 6 H 1.48503 * 109.47058 * 60.00679 * 3 2 1 7 7 C 1.37882 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99443 * 185.13260 * 7 2 1 9 9 C 1.50700 * 120.00398 * 5.12775 * 7 2 1 10 10 H 1.08999 * 109.70562 * 25.41545 * 9 7 2 11 11 C 1.53357 * 109.68353 * 264.88045 * 9 7 2 12 12 C 1.53108 * 109.50494 * 190.32723 * 11 9 7 13 13 C 1.53368 * 109.50219 * 70.28456 * 12 11 9 14 14 C 1.50823 * 108.38236 * 310.05871 * 13 12 11 15 15 N 1.34323 * 128.03947 * 196.55667 * 14 13 12 16 16 H 0.97010 * 126.08592 * 359.88255 * 15 14 13 17 17 N 1.40293 * 107.82382 * 179.88886 * 15 14 13 18 18 C 1.31069 * 108.26620 * 0.06063 * 17 15 14 19 19 C 1.35750 * 124.11962 * 16.53721 * 14 13 12 20 20 H 0.96995 * 119.99761 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.46423 * 70.31829 * 11 9 7 22 22 H 1.09003 * 109.46747 * 310.33881 * 11 9 7 23 23 H 1.08998 * 109.46962 * 190.29348 * 12 11 9 24 24 H 1.08997 * 109.46440 * 310.27435 * 12 11 9 25 25 H 1.08998 * 109.68288 * 69.78785 * 13 12 11 26 26 H 1.09004 * 109.68013 * 190.30183 * 13 12 11 27 27 H 1.07999 * 125.96242 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2123 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0813 -1.1960 0.0831 9 6 1.2556 -2.4966 -0.1178 10 1 0.3060 -2.3300 -0.6262 11 6 0.9989 -3.0725 1.2802 12 6 0.4735 -4.5050 1.1544 13 6 1.6011 -5.4230 0.6665 14 6 2.2372 -4.7915 -0.5465 15 7 3.0346 -5.3708 -1.4591 16 1 3.3194 -6.2982 -1.4626 17 7 3.3824 -4.3960 -2.4061 18 6 2.8084 -3.2682 -2.0646 19 6 2.0819 -3.4892 -0.8968 20 1 -0.4849 0.8400 0.0004 21 1 0.2604 -2.4587 1.7959 22 1 1.9292 -3.0754 1.8483 23 1 0.1200 -4.8491 2.1264 24 1 -0.3491 -4.5287 0.4397 25 1 2.3463 -5.5392 1.4534 26 1 1.1920 -6.3980 0.4015 27 1 2.8855 -2.3310 -2.5957 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082825223.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:39 Heat of formation + Delta-G solvation = 53.338779 kcal Electronic energy + Delta-G solvation = -11875.232898 eV Core-core repulsion = 9826.704970 eV Total energy + Delta-G solvation = -2048.527928 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.59071 -35.75728 -32.96540 -31.20590 -28.78282 -28.19648 -24.92000 -21.85323 -21.20977 -20.53932 -17.69890 -16.87703 -15.98564 -14.44331 -14.35467 -13.56614 -13.26605 -12.84543 -12.54450 -12.39867 -11.89769 -11.25910 -10.99739 -10.86860 -10.36862 -10.15311 -10.05028 -9.64390 -9.10221 -9.05224 -8.68102 -8.37340 -7.28973 -5.96851 -3.99518 2.62529 3.32871 3.41470 3.46195 3.57521 3.79400 4.49215 5.27185 5.35248 5.51675 5.61584 5.77217 6.02376 6.27609 6.44363 6.50373 6.61705 6.66781 6.96553 7.12284 7.26698 7.64572 7.73152 7.88167 7.99616 8.04817 8.43358 8.58008 9.10244 9.64267 11.11351 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.043341 B = 0.013372 C = 0.010947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.883851 B = 2093.408825 C = 2557.274566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.887 3.113 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.501 4.501 8 H 0.054 0.946 9 C 0.103 3.897 10 H 0.062 0.938 11 C -0.104 4.104 12 C -0.116 4.116 13 C -0.045 4.045 14 C 0.044 3.956 15 N -0.488 5.488 16 H 0.425 0.575 17 N -0.325 5.325 18 C 0.066 3.934 19 C -0.179 4.179 20 H 0.260 0.740 21 H 0.059 0.941 22 H 0.044 0.956 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.737 -8.242 1.079 8.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.715 3.285 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.539 4.539 8 H 0.073 0.927 9 C 0.083 3.917 10 H 0.080 0.920 11 C -0.142 4.142 12 C -0.154 4.154 13 C -0.084 4.084 14 C -0.084 4.084 15 N -0.197 5.197 16 H 0.266 0.734 17 N -0.149 5.149 18 C -0.118 4.118 19 C -0.190 4.190 20 H 0.070 0.930 21 H 0.078 0.922 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.327 -8.646 0.223 8.956 hybrid contribution 0.161 0.869 0.559 1.046 sum 2.488 -7.777 0.782 8.202 Atomic orbital electron populations 1.69947 1.05904 1.26445 1.50850 1.24987 0.94799 0.99052 0.94994 0.86608 0.80310 0.84002 0.77531 1.19748 1.20999 1.21182 1.21080 0.93199 0.90008 1.49597 0.92743 1.17489 0.94891 0.89841 0.89464 0.91970 1.21749 0.99472 0.92093 1.00866 1.21654 0.96724 0.97306 0.99728 1.20207 0.97771 0.97763 0.92670 1.20948 0.98040 0.94766 0.94610 1.45867 1.41367 1.11333 1.21115 0.73390 1.77305 1.25632 0.98272 1.13647 1.23617 0.95543 0.96112 0.96567 1.20896 1.05722 0.93730 0.98637 0.93048 0.92209 0.93755 0.92754 0.92152 0.91030 0.91888 0.80407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 12.86 55.43 0.71 -24.67 15 2 C 0.06 1.72 5.45 -17.82 -0.10 1.63 15 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 15 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15 7 C -0.50 -13.51 7.97 -34.44 -0.27 -13.78 15 8 H 0.05 1.50 7.82 -52.48 -0.41 1.09 15 9 C 0.10 2.53 2.54 -92.67 -0.24 2.30 15 10 H 0.06 1.71 7.41 -51.93 -0.38 1.32 15 11 C -0.10 -2.25 5.20 -26.49 -0.14 -2.39 15 12 C -0.12 -2.01 5.90 -26.48 -0.16 -2.17 15 13 C -0.04 -0.70 6.30 -27.63 -0.17 -0.88 15 14 C 0.04 0.83 7.08 -82.33 -0.58 0.25 15 15 N -0.49 -8.64 7.34 33.48 0.25 -8.39 15 16 H 0.42 5.75 8.96 -182.44 -1.64 4.12 15 17 N -0.33 -6.65 12.71 30.55 0.39 -6.26 15 18 C 0.07 1.44 11.56 -17.48 -0.20 1.24 15 19 C -0.18 -4.02 5.42 -105.05 -0.57 -4.59 15 20 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 21 H 0.06 1.39 8.14 -51.93 -0.42 0.96 15 22 H 0.04 0.96 8.08 -51.93 -0.42 0.54 15 23 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 24 H 0.06 1.07 8.11 -51.93 -0.42 0.65 15 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 27 H 0.18 3.71 8.06 -52.49 -0.42 3.28 15 LS Contribution 230.51 15.07 3.47 3.47 Total: -1.00 -29.68 230.51 -7.15 -36.83 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.52 Total: 1.30 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -2.43 Total: -18.39 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 1.35 Total: -39.32 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.68 -7.15 -36.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082825223.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.173 kcal (2) G-P(sol) polarization free energy of solvation -29.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds