Wall clock time and date at job start Mon Mar 30 2020 01:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47569 * 2 1 4 4 H 1.08997 * 109.47037 * 305.56259 * 3 2 1 5 5 C 1.50699 * 109.47043 * 65.55798 * 3 2 1 6 6 H 1.08002 * 119.99734 * 55.16034 * 5 3 2 7 7 C 1.37872 * 120.00422 * 235.15646 * 5 3 2 8 8 N 1.31516 * 120.00369 * 173.58998 * 7 5 3 9 9 Si 1.86803 * 119.99689 * 353.59003 * 7 5 3 10 10 H 1.48507 * 109.46862 * 85.73102 * 9 7 5 11 11 H 1.48503 * 109.46986 * 205.72738 * 9 7 5 12 12 H 1.48496 * 109.47475 * 325.72904 * 9 7 5 13 13 C 1.50699 * 109.47530 * 185.55761 * 3 2 1 14 14 C 1.38650 * 120.79073 * 299.98162 * 13 3 2 15 15 C 1.38206 * 119.16374 * 180.02562 * 14 13 3 16 16 N 1.31868 * 120.76217 * 359.97438 * 15 14 13 17 17 C 1.31877 * 121.72884 * 0.02562 * 16 15 14 18 18 C 1.38201 * 120.76154 * 0.02562 * 17 16 15 19 19 H 1.08997 * 109.47148 * 301.05716 * 1 2 3 20 20 H 1.09006 * 109.46783 * 61.05290 * 1 2 3 21 21 H 1.08996 * 109.47537 * 181.05392 * 1 2 3 22 22 H 1.09004 * 109.47258 * 239.99902 * 2 1 3 23 23 H 1.09007 * 109.46824 * 120.00032 * 2 1 3 24 24 H 0.97002 * 119.99731 * 180.02562 * 8 7 5 25 25 H 1.07995 * 120.41986 * 0.03203 * 14 13 3 26 26 H 1.08000 * 119.62170 * 180.25578 * 15 14 13 27 27 H 1.07994 * 119.61785 * 179.97438 * 17 16 15 28 28 H 1.07996 * 120.41758 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 1.6533 2.1120 1.2935 6 1 1.9362 1.6685 2.2367 7 6 0.9384 3.2907 1.2728 8 7 0.4921 3.8090 2.3961 9 14 0.6038 4.1517 -0.3509 10 1 -0.6202 3.5824 -0.9699 11 1 0.4070 5.6037 -0.1099 12 1 1.7582 3.9533 -1.2636 13 6 3.5408 1.4446 -0.1376 14 6 4.3409 0.8175 0.8052 15 6 5.7135 0.8407 0.6462 16 7 6.2626 1.4491 -0.3869 17 6 5.5330 2.0557 -1.3027 18 6 4.1543 2.0748 -1.2095 19 1 -0.3633 0.5301 0.8803 20 1 -0.3633 0.4974 -0.8993 21 1 -0.3634 -1.0274 0.0189 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 -0.0111 4.6382 2.3814 25 1 3.8971 0.3171 1.6531 26 1 6.3436 0.3510 1.3739 27 1 6.0185 2.5439 -2.1348 28 1 3.5621 2.5729 -1.9629 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084329629.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:56 Heat of formation + Delta-G solvation = 13.684806 kcal Electronic energy + Delta-G solvation = -11625.949863 eV Core-core repulsion = 9641.128320 eV Total energy + Delta-G solvation = -1984.821542 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.47421 -35.54735 -32.10202 -31.15757 -30.51152 -27.30428 -23.93984 -22.87945 -21.84166 -19.46113 -17.21420 -16.00918 -15.28695 -14.97380 -14.29360 -13.47909 -13.20556 -13.01395 -12.91912 -12.77803 -11.87435 -11.30542 -11.06044 -10.98039 -10.63032 -10.42854 -9.91764 -9.81255 -9.22844 -8.91849 -8.61037 -8.51653 -8.44453 -6.20809 -4.19790 1.80128 2.07968 3.20049 3.28458 3.29412 4.30238 4.51311 5.00941 5.10934 5.41351 5.65293 5.82981 5.91191 5.94124 6.09804 6.19985 6.32731 6.39667 6.57758 6.61698 6.83677 6.99184 7.02198 7.19536 7.31929 7.42974 7.61341 8.37047 8.57088 8.83402 9.40760 10.91643 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.034589 B = 0.014544 C = 0.012920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.303137 B = 1924.700703 C = 2166.584766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 C 0.039 3.961 4 H 0.045 0.955 5 C -0.501 4.501 6 H 0.078 0.922 7 C 0.075 3.925 8 N -0.893 5.893 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.264 1.264 13 C 0.008 3.992 14 C -0.161 4.161 15 C 0.084 3.916 16 N -0.511 5.511 17 C 0.087 3.913 18 C -0.191 4.191 19 H 0.072 0.928 20 H 0.039 0.961 21 H 0.035 0.965 22 H 0.033 0.967 23 H 0.054 0.946 24 H 0.266 0.734 25 H 0.130 0.870 26 H 0.144 0.856 27 H 0.143 0.857 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.675 -4.646 -6.040 8.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.141 4.141 3 C 0.020 3.980 4 H 0.063 0.937 5 C -0.538 4.538 6 H 0.096 0.904 7 C -0.128 4.128 8 N -0.529 5.529 9 Si 0.699 3.301 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.189 1.189 13 C 0.000 4.000 14 C -0.180 4.180 15 C -0.072 4.072 16 N -0.221 5.221 17 C -0.069 4.069 18 C -0.211 4.211 19 H 0.091 0.909 20 H 0.058 0.942 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.073 0.927 24 H 0.076 0.924 25 H 0.148 0.852 26 H 0.162 0.838 27 H 0.160 0.840 28 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.469 -4.480 -6.023 8.736 hybrid contribution -1.159 0.763 -0.649 1.532 sum 3.310 -3.717 -6.672 8.324 Atomic orbital electron populations 1.21658 0.96302 0.99426 1.02434 1.21525 0.95808 0.97403 0.99317 1.18493 0.86297 0.94520 0.98719 0.93679 1.20812 1.34252 1.07436 0.91294 0.90440 1.25077 0.94819 0.96786 0.96105 1.69887 1.36235 1.20464 1.26336 0.86935 0.79257 0.79091 0.84800 1.19889 1.21447 1.18931 1.21155 0.99265 0.89262 0.90358 1.21931 0.94113 1.01713 1.00291 1.22575 0.93002 0.96495 0.95081 1.67551 1.41011 1.10167 1.03410 1.22494 0.91020 0.96493 0.96930 1.22070 0.95869 1.03069 1.00079 0.90880 0.94230 0.94617 0.94839 0.92695 0.92424 0.85238 0.83830 0.83981 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.75 37.16 0.36 -2.29 15 2 C -0.10 -2.00 5.13 -26.73 -0.14 -2.14 15 3 C 0.04 0.86 1.91 -92.93 -0.18 0.68 15 4 H 0.05 1.02 4.65 -51.93 -0.24 0.78 15 5 C -0.50 -13.12 7.50 -34.44 -0.26 -13.37 15 6 H 0.08 2.21 8.06 -52.49 -0.42 1.79 15 7 C 0.08 2.06 5.47 -17.82 -0.10 1.96 15 8 N -0.89 -26.20 13.96 55.43 0.77 -25.43 15 9 Si 0.87 20.74 26.93 -169.99 -4.58 16.16 15 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 15 12 H -0.26 -6.00 6.73 56.52 0.38 -5.62 15 13 C 0.01 0.17 4.78 -104.32 -0.50 -0.33 15 14 C -0.16 -3.12 9.02 -39.44 -0.36 -3.47 15 15 C 0.08 1.51 11.18 -17.55 -0.20 1.31 15 16 N -0.51 -9.59 10.36 -13.25 -0.14 -9.72 15 17 C 0.09 1.56 11.18 -17.55 -0.20 1.36 15 18 C -0.19 -3.69 9.76 -39.44 -0.39 -4.07 15 19 H 0.07 1.55 7.37 -51.93 -0.38 1.17 15 20 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 21 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 15 23 H 0.05 1.05 7.69 -51.93 -0.40 0.65 15 24 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 25 H 0.13 2.41 7.74 -52.49 -0.41 2.00 15 26 H 0.14 2.10 8.06 -52.49 -0.42 1.67 15 27 H 0.14 2.05 8.06 -52.49 -0.42 1.63 15 28 H 0.12 2.22 7.92 -52.49 -0.42 1.80 15 LS Contribution 240.18 15.07 3.62 3.62 Total: -1.00 -28.87 240.18 -5.80 -34.67 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -3.54 Total: 1.06 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -1.94 Total: -20.36 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.64 Total: -35.15 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.58 Total: 16.16 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.87 -5.80 -34.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329629.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.357 kcal (2) G-P(sol) polarization free energy of solvation -28.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds