Wall clock time and date at job start Mon Mar 30 2020 01:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47470 * 2 1 4 4 H 1.09004 * 109.47177 * 305.62762 * 3 2 1 5 5 C 1.50700 * 109.47321 * 65.62409 * 3 2 1 6 6 H 1.08007 * 119.99650 * 28.16668 * 5 3 2 7 7 C 1.37875 * 120.00477 * 208.16770 * 5 3 2 8 8 N 1.31513 * 119.99909 * 6.20457 * 7 5 3 9 9 Si 1.86805 * 119.99987 * 186.20364 * 7 5 3 10 10 H 1.48497 * 109.47088 * 60.00249 * 9 7 5 11 11 H 1.48497 * 109.46774 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47158 * 299.99912 * 9 7 5 13 13 C 1.50697 * 109.47472 * 185.63019 * 3 2 1 14 14 C 1.38669 * 120.42502 * 120.02045 * 13 3 2 15 15 C 1.38624 * 118.42326 * 179.97438 * 14 13 3 16 16 C 1.38223 * 119.16408 * 0.02562 * 15 14 13 17 17 N 1.31860 * 120.76071 * 359.97438 * 16 15 14 18 18 C 1.31879 * 121.72876 * 0.02562 * 17 16 15 19 19 H 1.09006 * 109.46739 * 54.07330 * 1 2 3 20 20 H 1.08994 * 109.47459 * 174.07487 * 1 2 3 21 21 H 1.09004 * 109.47269 * 294.07915 * 1 2 3 22 22 H 1.09002 * 109.47157 * 239.99396 * 2 1 3 23 23 H 1.09006 * 109.46828 * 120.00144 * 2 1 3 24 24 H 0.96995 * 120.00307 * 180.02562 * 8 7 5 25 25 H 1.08006 * 120.78530 * 0.02562 * 14 13 3 26 26 H 1.08003 * 120.41747 * 180.02562 * 15 14 13 27 27 H 1.08002 * 119.61925 * 179.97438 * 16 15 14 28 28 H 1.07993 * 119.62238 * 180.28034 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5968 1.9846 -0.8353 5 6 1.6547 2.1116 1.2941 6 1 1.5296 1.5221 2.1905 7 6 1.4618 3.4762 1.3340 8 7 1.4936 4.1775 0.2219 9 14 1.1551 4.3288 2.9676 10 1 2.3139 4.1039 3.8685 11 1 0.9810 5.7859 2.7403 12 1 -0.0727 3.7745 3.5925 13 6 3.5406 1.4447 -0.1394 14 6 4.1449 2.0776 -1.2151 15 6 5.5283 2.0545 -1.3020 16 6 6.2541 1.4057 -0.3208 17 7 5.6455 0.8143 0.6884 18 6 4.3317 0.8161 0.8033 19 1 -0.3633 0.6030 -0.8322 20 1 -0.3634 -1.0221 -0.1061 21 1 -0.3634 0.4193 0.9383 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5139 0.8900 24 1 1.3583 5.1376 0.2500 25 1 3.5519 2.5773 -1.9669 26 1 6.0325 2.5375 -2.1260 27 1 7.3322 1.3829 -0.3815 28 1 3.8690 0.3249 1.6464 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084329636.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:53 Heat of formation + Delta-G solvation = 11.464295 kcal Electronic energy + Delta-G solvation = -11621.268871 eV Core-core repulsion = 9636.351040 eV Total energy + Delta-G solvation = -1984.917831 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.23832 -35.20368 -31.92298 -31.41257 -30.16386 -26.57891 -23.95844 -22.67552 -21.64674 -19.55660 -16.67899 -16.22921 -15.11777 -14.59606 -14.14132 -13.41120 -13.06752 -12.95844 -12.40405 -12.10743 -11.51004 -11.45339 -11.08022 -10.95278 -10.49342 -10.35637 -10.08278 -9.53256 -9.10019 -8.81722 -8.70318 -8.39178 -7.83642 -6.12134 -4.14309 2.06117 2.26494 3.28199 3.32933 3.36367 4.36804 4.75792 5.20181 5.29110 5.62008 5.91049 5.93821 6.06677 6.08911 6.25214 6.33114 6.51448 6.71521 6.81970 6.91171 7.02868 7.09213 7.18031 7.39604 7.68907 7.72046 7.86042 8.27952 8.84204 8.91543 9.49020 10.96389 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.030040 B = 0.015125 C = 0.012251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.869490 B = 1850.766643 C = 2284.909876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.107 4.107 3 C 0.067 3.933 4 H 0.064 0.936 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.888 3.112 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.275 1.275 13 C -0.066 4.066 14 C -0.084 4.084 15 C -0.179 4.179 16 C 0.053 3.947 17 N -0.497 5.497 18 C 0.092 3.908 19 H 0.046 0.954 20 H 0.029 0.971 21 H 0.061 0.939 22 H 0.032 0.968 23 H 0.047 0.953 24 H 0.263 0.737 25 H 0.125 0.875 26 H 0.118 0.882 27 H 0.138 0.862 28 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.617 -3.981 -2.260 5.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.144 4.144 3 C 0.047 3.953 4 H 0.082 0.918 5 C -0.543 4.543 6 H 0.077 0.923 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.201 1.201 13 C -0.068 4.068 14 C -0.110 4.110 15 C -0.199 4.199 16 C -0.104 4.104 17 N -0.206 5.206 18 C -0.065 4.065 19 H 0.065 0.935 20 H 0.048 0.952 21 H 0.080 0.920 22 H 0.051 0.949 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.143 0.857 26 H 0.136 0.864 27 H 0.155 0.845 28 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.100 -4.204 -1.698 5.492 hybrid contribution -0.540 1.268 0.226 1.397 sum 2.560 -2.935 -1.472 4.164 Atomic orbital electron populations 1.21583 0.96462 0.98554 1.02434 1.21537 0.95615 0.98314 0.98968 1.18059 0.85536 0.91954 0.99719 0.91768 1.20951 1.46682 0.92105 0.94609 0.92329 1.24991 0.94583 0.97759 0.96230 1.69900 1.48972 1.07151 1.26190 0.86704 0.78887 0.78475 0.84330 1.20142 1.21297 1.20057 1.21789 1.00748 0.92364 0.91898 1.21514 0.93866 0.97473 0.98101 1.21965 0.95291 1.02067 1.00590 1.22324 0.99331 0.97147 0.91566 1.67533 1.12118 1.18144 1.22755 1.22489 0.88221 0.97594 0.98158 0.93501 0.95177 0.92040 0.94885 0.93442 0.92768 0.85714 0.86439 0.84483 0.83656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.64 37.16 0.36 -2.14 15 2 C -0.11 -2.15 5.12 -26.73 -0.14 -2.28 15 3 C 0.07 1.56 2.02 -92.93 -0.19 1.37 15 4 H 0.06 1.66 7.21 -51.93 -0.37 1.28 15 5 C -0.51 -13.06 7.07 -34.44 -0.24 -13.30 15 6 H 0.06 1.50 7.82 -52.48 -0.41 1.09 15 7 C 0.07 1.81 5.45 -17.82 -0.10 1.71 15 8 N -0.89 -24.60 12.87 55.43 0.71 -23.89 15 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 15 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 15 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 13 C -0.07 -1.48 4.78 -104.48 -0.50 -1.98 15 14 C -0.08 -1.76 9.81 -39.28 -0.39 -2.15 15 15 C -0.18 -3.30 10.11 -39.44 -0.40 -3.70 15 16 C 0.05 0.99 11.18 -17.55 -0.20 0.79 15 17 N -0.50 -10.48 10.36 -13.25 -0.14 -10.62 15 18 C 0.09 2.02 10.06 -17.55 -0.18 1.85 15 19 H 0.05 0.89 8.14 -51.93 -0.42 0.47 15 20 H 0.03 0.48 8.14 -51.93 -0.42 0.05 15 21 H 0.06 1.22 7.60 -51.93 -0.39 0.82 15 22 H 0.03 0.62 8.14 -51.93 -0.42 0.20 15 23 H 0.05 0.93 7.62 -51.93 -0.40 0.53 15 24 H 0.26 7.05 8.31 -40.82 -0.34 6.71 15 25 H 0.12 2.57 8.00 -52.48 -0.42 2.15 15 26 H 0.12 1.77 8.06 -52.48 -0.42 1.35 15 27 H 0.14 2.07 8.06 -52.49 -0.42 1.65 15 28 H 0.15 3.06 7.67 -52.49 -0.40 2.65 15 LS Contribution 244.10 15.07 3.68 3.68 Total: -1.00 -27.88 244.10 -6.38 -34.26 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -3.65 Total: 0.44 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -1.96 Total: -19.83 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.58 Total: -34.51 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -27.88 -6.38 -34.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329636.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.726 kcal (2) G-P(sol) polarization free energy of solvation -27.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds