Wall clock time and date at job start Mon Mar 30 2020 01:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30555 * 1 3 3 Si 1.86806 * 119.99553 * 2 1 4 4 H 1.48502 * 109.46965 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47017 * 299.99416 * 3 2 1 6 6 H 1.48500 * 109.47250 * 60.00005 * 3 2 1 7 7 C 1.40631 * 120.00421 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99863 * 180.02562 * 7 2 1 9 9 C 1.38788 * 119.99777 * 359.97438 * 7 2 1 10 10 C 1.38241 * 120.00128 * 179.97438 * 9 7 2 11 11 C 1.46219 * 120.00519 * 180.02562 * 10 9 7 12 12 C 1.40406 * 120.23309 * 0.02562 * 11 10 9 13 13 C 1.37650 * 119.80626 * 180.02562 * 12 11 10 14 14 C 1.38635 * 120.28431 * 0.02562 * 13 12 11 15 15 C 1.38405 * 120.47986 * 359.97180 * 14 13 12 16 16 C 1.38061 * 120.18645 * 0.02562 * 15 14 13 17 17 F 1.35103 * 120.14013 * 179.97438 * 16 15 14 18 18 H 0.96994 * 120.00346 * 0.02562 * 1 2 3 19 19 H 1.08003 * 120.00360 * 0.02562 * 9 7 2 20 20 H 1.08008 * 119.99967 * 0.02562 * 10 9 7 21 21 H 1.08007 * 120.09758 * 0.04401 * 12 11 10 22 22 H 1.08003 * 119.86313 * 180.02562 * 13 12 11 23 23 H 1.08002 * 119.75451 * 179.70410 * 14 13 12 24 24 H 1.08002 * 119.90408 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3056 0.0000 0.0000 3 14 2.2395 1.6179 0.0000 4 1 3.6995 1.3466 0.0006 5 1 1.8807 2.3964 -1.2126 6 1 1.8807 2.3966 1.2125 7 6 2.0088 -1.2178 0.0005 8 1 3.0888 -1.2177 0.0010 9 6 1.3149 -2.4198 0.0016 10 6 2.0061 -3.6170 0.0016 11 6 1.2752 -4.8834 0.0022 12 6 -0.1289 -4.8892 0.0022 13 6 -0.8081 -6.0865 0.0033 14 6 -0.1118 -7.2853 0.0049 15 6 1.2722 -7.2933 0.0048 16 6 1.9733 -6.1039 0.0037 17 9 3.3243 -6.1128 0.0042 18 1 -0.4850 0.8400 -0.0004 19 1 0.2349 -2.4199 0.0016 20 1 3.0862 -3.6170 0.0012 21 1 -0.6744 -3.9570 0.0011 22 1 -1.8881 -6.0921 0.0028 23 1 -0.6534 -8.2197 0.0105 24 1 1.8052 -8.2326 0.0065 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084427408.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:30 Heat of formation + Delta-G solvation = -50.412082 kcal Electronic energy + Delta-G solvation = -10827.867117 eV Core-core repulsion = 8619.087158 eV Total energy + Delta-G solvation = -2208.779959 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.065 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.50626 -39.36471 -36.59913 -34.04541 -31.19941 -30.86922 -27.00644 -24.04240 -22.90425 -20.67740 -19.27157 -18.14975 -17.16464 -16.68381 -16.31600 -16.27753 -15.01934 -14.82979 -14.43591 -13.79136 -13.36332 -13.26990 -13.05598 -13.02108 -12.36435 -12.06431 -11.69718 -11.60681 -11.39682 -10.74366 -9.59800 -9.08108 -9.06285 -6.46767 0.29053 0.53182 1.26426 1.33090 1.51317 1.88196 2.08860 2.88706 3.36639 3.69411 4.07698 4.25988 4.50932 4.64630 4.73800 4.77264 4.86240 5.32702 5.39505 5.55321 5.58427 5.69506 5.84664 6.07442 6.28749 6.35681 6.69868 6.84357 7.94175 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.062397 B = 0.008492 C = 0.007495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.631644 B = 3296.332847 C = 3735.122271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.030 3.970 3 Si 1.003 2.997 4 H -0.258 1.258 5 H -0.253 1.253 6 H -0.253 1.253 7 C -0.443 4.443 8 H 0.078 0.922 9 C 0.066 3.934 10 C -0.439 4.439 11 C 0.002 3.998 12 C -0.183 4.183 13 C -0.097 4.097 14 C -0.168 4.168 15 C -0.124 4.124 16 C -0.018 4.018 17 F -0.165 7.165 18 H 0.309 0.691 19 H 0.087 0.913 20 H 0.065 0.935 21 H 0.112 0.888 22 H 0.147 0.853 23 H 0.158 0.842 24 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.195 -2.900 0.007 3.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.182 1.182 5 H -0.177 1.177 6 H -0.177 1.177 7 C -0.469 4.469 8 H 0.096 0.904 9 C 0.044 3.956 10 C -0.460 4.460 11 C 0.001 3.999 12 C -0.201 4.201 13 C -0.115 4.115 14 C -0.186 4.186 15 C -0.143 4.143 16 C -0.037 4.037 17 F -0.144 7.144 18 H 0.120 0.880 19 H 0.105 0.895 20 H 0.083 0.917 21 H 0.129 0.871 22 H 0.165 0.835 23 H 0.175 0.825 24 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.390 -2.747 0.008 3.641 hybrid contribution 0.751 0.697 0.000 1.024 sum -1.639 -2.050 0.008 2.625 Atomic orbital electron populations 1.69480 1.09579 1.33203 1.29995 1.27472 0.95885 1.06069 0.89700 0.84842 0.79028 0.74023 0.80013 1.18151 1.17671 1.17684 1.20144 0.95949 0.92057 1.38721 0.90371 1.20744 0.97012 0.92292 0.85518 1.20919 0.95559 0.90979 1.38500 1.19286 0.94044 0.92419 0.94188 1.21186 0.92210 0.98990 1.07751 1.21283 1.00745 0.91617 0.97815 1.21070 0.92406 0.98861 1.06218 1.21141 0.95781 0.95768 1.01573 1.18145 0.76190 0.95101 1.14269 1.91302 1.30602 1.97468 1.95068 0.87966 0.89525 0.91709 0.87050 0.83503 0.82481 0.83708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.21 12.85 21.95 0.28 -37.93 14 2 C 0.03 1.42 5.51 85.47 0.47 1.89 14 3 Si 1.00 34.62 29.57 68.60 2.03 36.65 14 4 H -0.26 -8.99 7.11 99.48 0.71 -8.29 14 5 H -0.25 -8.13 7.11 99.48 0.71 -7.42 14 6 H -0.25 -8.13 7.11 99.48 0.71 -7.43 14 7 C -0.44 -23.58 9.03 22.99 0.21 -23.37 14 8 H 0.08 4.11 7.86 -2.91 -0.02 4.09 14 9 C 0.07 3.66 8.80 22.40 0.20 3.86 14 10 C -0.44 -24.58 9.49 24.35 0.23 -24.35 14 11 C 0.00 0.08 5.88 -20.10 -0.12 -0.03 14 12 C -0.18 -8.13 9.43 22.66 0.21 -7.92 14 13 C -0.10 -3.39 10.02 22.23 0.22 -3.17 14 14 C -0.17 -5.36 10.04 22.40 0.22 -5.13 14 15 C -0.12 -4.54 10.01 22.27 0.22 -4.31 14 16 C -0.02 -0.83 7.31 22.81 0.17 -0.67 14 17 F -0.17 -7.93 16.63 44.97 0.75 -7.18 14 18 H 0.31 12.70 8.29 -92.71 -0.77 11.94 14 19 H 0.09 4.84 5.47 -2.91 -0.02 4.83 14 20 H 0.06 3.80 7.74 -2.91 -0.02 3.77 14 21 H 0.11 5.06 6.18 -2.91 -0.02 5.05 14 22 H 0.15 4.01 8.06 -2.91 -0.02 3.98 14 23 H 0.16 3.61 8.06 -2.91 -0.02 3.59 14 24 H 0.15 4.31 8.06 -2.91 -0.02 4.29 14 Total: -1.00 -59.57 225.58 6.30 -53.27 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 1.20 Total: 18.40 kcal Atomic # 6 Polarization: -65.25 SS G_CDS: 2.04 Total: -63.21 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.28 Total: -37.93 kcal Atomic # 9 Polarization: -7.93 SS G_CDS: 0.75 Total: -7.18 kcal Atomic # 14 Polarization: 34.62 SS G_CDS: 2.03 Total: 36.65 kcal Total: -59.57 6.30 -53.27 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084427408.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.863 kcal (2) G-P(sol) polarization free energy of solvation -59.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds