Wall clock time and date at job start Mon Mar 30 2020 01:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47626 * 2 1 4 4 N 1.46901 * 109.47277 * 120.00061 * 2 1 3 5 5 C 1.50700 * 109.47091 * 239.99786 * 2 1 3 6 6 C 1.38653 * 119.87734 * 279.72644 * 5 2 1 7 7 C 1.38614 * 120.49841 * 179.72067 * 6 5 2 8 8 C 1.37638 * 120.24920 * 0.55641 * 7 6 5 9 9 C 1.40692 * 119.74347 * 359.72401 * 8 7 6 10 10 C 1.41398 * 120.24179 * 180.02562 * 9 8 7 11 11 H 1.07998 * 120.00119 * 155.21449 * 10 9 8 12 12 C 1.39946 * 120.00003 * 335.20500 * 10 9 8 13 13 N 1.30831 * 119.99876 * 342.28981 * 12 10 9 14 14 Si 1.86803 * 119.99912 * 162.29124 * 12 10 9 15 15 H 1.48492 * 109.47166 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46854 * 119.99971 * 14 12 10 17 17 H 1.48501 * 109.46973 * 240.00133 * 14 12 10 18 18 C 1.37597 * 119.87405 * 100.00225 * 5 2 1 19 19 H 1.09003 * 109.47133 * 300.00348 * 1 2 3 20 20 H 1.09000 * 109.47133 * 59.99446 * 1 2 3 21 21 H 1.08999 * 109.47109 * 179.97438 * 1 2 3 22 22 H 1.00905 * 111.00231 * 296.05007 * 4 2 1 23 23 H 1.00907 * 110.99919 * 59.99404 * 4 2 1 24 24 H 1.07999 * 119.74721 * 0.02562 * 6 5 2 25 25 H 1.08005 * 119.87499 * 180.26583 * 7 6 5 26 26 H 1.08001 * 120.12370 * 179.70935 * 8 7 6 27 27 H 0.97003 * 119.99630 * 179.97438 * 13 12 10 28 28 H 1.07999 * 120.12694 * 0.02562 * 18 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0323 -0.7105 -1.2304 6 6 2.0710 -2.0961 -1.2605 7 6 2.5252 -2.7629 -2.3876 8 6 2.9541 -2.0541 -3.4868 9 6 2.9247 -0.6477 -3.4654 10 6 3.3623 0.0909 -4.5889 11 1 2.9916 1.0916 -4.7550 12 6 4.2759 -0.4746 -5.4855 13 7 4.9851 -1.5143 -5.1280 14 14 4.4829 0.2550 -7.1926 15 1 3.5723 1.4177 -7.3477 16 1 5.8881 0.6998 -7.3738 17 1 4.1532 -0.7721 -8.2132 18 6 2.4561 0.0185 -2.3177 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.7502 -0.1990 2.0373 23 1 1.6961 -1.6480 1.2228 24 1 1.7402 -2.6602 -0.4010 25 1 2.5471 -3.8426 -2.4017 26 1 3.3120 -2.5757 -4.3622 27 1 5.6181 -1.9065 -5.7497 28 1 2.4297 1.0979 -2.2904 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104507725.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:35 Heat of formation + Delta-G solvation = 3.932406 kcal Electronic energy + Delta-G solvation = -11385.927366 eV Core-core repulsion = 9400.682928 eV Total energy + Delta-G solvation = -1985.244438 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.97682 -35.29022 -33.21425 -29.81197 -29.18594 -27.73697 -25.16521 -22.46635 -20.68597 -19.50910 -16.94287 -15.75579 -15.27724 -14.48242 -14.00884 -13.43624 -13.20706 -12.74890 -12.62733 -12.25657 -11.56345 -11.53094 -11.08298 -10.98522 -10.76941 -10.39791 -10.33605 -9.53779 -9.31489 -9.09642 -8.29186 -7.39475 -7.18878 -6.69741 -4.29730 2.83030 3.03894 3.10493 3.15978 3.26771 3.97694 4.66013 5.10022 5.43922 5.59992 5.73310 5.87179 6.16503 6.22919 6.39515 6.51945 6.55435 6.98798 7.11683 7.30339 7.43374 7.54853 7.67834 7.85348 7.97981 8.10906 8.18338 8.35490 8.70269 8.95838 9.04223 10.25482 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.064524 B = 0.009680 C = 0.008951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.844403 B = 2891.943699 C = 3127.290874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.131 3.869 3 H 0.076 0.924 4 N -0.839 5.839 5 C -0.053 4.053 6 C -0.224 4.224 7 C -0.108 4.108 8 C -0.165 4.165 9 C 0.110 3.890 10 C -0.466 4.466 11 H 0.076 0.924 12 C 0.076 3.924 13 N -0.796 5.796 14 Si 0.906 3.094 15 H -0.261 1.261 16 H -0.275 1.275 17 H -0.273 1.273 18 C -0.217 4.217 19 H 0.044 0.956 20 H 0.061 0.939 21 H 0.053 0.947 22 H 0.329 0.671 23 H 0.338 0.662 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.116 0.884 27 H 0.279 0.721 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.792 0.975 4.070 6.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.020 3.980 3 H 0.094 0.906 4 N -0.368 5.368 5 C -0.054 4.054 6 C -0.243 4.243 7 C -0.126 4.126 8 C -0.184 4.184 9 C 0.108 3.892 10 C -0.496 4.496 11 H 0.095 0.905 12 C -0.141 4.141 13 N -0.422 5.422 14 Si 0.731 3.269 15 H -0.185 1.185 16 H -0.201 1.201 17 H -0.198 1.198 18 C -0.237 4.237 19 H 0.063 0.937 20 H 0.080 0.920 21 H 0.072 0.928 22 H 0.140 0.860 23 H 0.152 0.848 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.134 0.866 27 H 0.089 0.911 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.862 0.966 3.692 5.430 hybrid contribution -0.776 0.122 -0.536 0.951 sum -4.638 1.088 3.156 5.715 Atomic orbital electron populations 1.22578 0.98028 1.01716 1.01284 1.20276 0.91267 0.97333 0.89153 0.90584 1.58931 1.67767 1.06379 1.03725 1.19074 0.99548 0.93478 0.93272 1.20018 1.12902 0.93176 0.98242 1.20657 1.00105 0.97265 0.94603 1.21309 1.04457 0.94389 0.98266 1.17565 0.88490 0.92054 0.91123 1.19573 1.22344 1.01534 1.06149 0.90549 1.25889 0.93958 0.94320 0.99932 1.69851 1.17158 1.19636 1.35530 0.86305 0.78746 0.80016 0.81880 1.18461 1.20060 1.19781 1.20793 1.11314 0.97267 0.94284 0.93669 0.92009 0.92796 0.85980 0.84819 0.89925 0.89607 0.86619 0.91054 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 9.46 37.16 0.35 -2.35 15 2 C 0.13 2.35 3.59 -68.87 -0.25 2.11 15 3 H 0.08 1.37 7.99 -51.93 -0.42 0.96 15 4 N -0.84 -13.50 9.05 -5.65 -0.05 -13.55 15 5 C -0.05 -1.20 4.95 -104.70 -0.52 -1.72 15 6 C -0.22 -5.09 9.30 -39.29 -0.37 -5.45 15 7 C -0.11 -2.62 10.02 -39.66 -0.40 -3.01 15 8 C -0.16 -4.42 8.70 -38.87 -0.34 -4.76 15 9 C 0.11 3.02 5.57 -106.83 -0.60 2.42 15 10 C -0.47 -12.69 9.05 -37.74 -0.34 -13.03 15 11 H 0.08 2.00 7.91 -52.49 -0.41 1.59 15 12 C 0.08 1.96 5.14 -17.34 -0.09 1.87 15 13 N -0.80 -21.18 10.97 55.55 0.61 -20.57 15 14 Si 0.91 19.03 29.59 -169.99 -5.03 14.00 15 15 H -0.26 -5.42 7.11 56.52 0.40 -5.01 15 16 H -0.28 -5.68 7.11 56.52 0.40 -5.28 15 17 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 18 C -0.22 -5.45 9.41 -38.87 -0.37 -5.82 15 19 H 0.04 0.57 8.14 -51.93 -0.42 0.15 15 20 H 0.06 0.97 8.14 -51.93 -0.42 0.55 15 21 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.33 4.26 9.07 -39.29 -0.36 3.90 15 23 H 0.34 5.19 7.32 -39.29 -0.29 4.90 15 24 H 0.08 1.66 6.63 -52.49 -0.35 1.31 15 25 H 0.09 1.86 8.06 -52.48 -0.42 1.44 15 26 H 0.12 3.19 6.18 -52.49 -0.32 2.87 15 27 H 0.28 6.71 8.30 -40.82 -0.34 6.37 15 28 H 0.09 2.15 8.03 -52.49 -0.42 1.73 15 LS Contribution 240.04 15.07 3.62 3.62 Total: -1.00 -28.43 240.04 -7.15 -35.58 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -3.39 Total: 10.67 kcal Atomic # 6 Polarization: -26.84 SS G_CDS: -2.91 Total: -29.74 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: 0.56 Total: -34.12 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.43 -7.15 -35.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104507725.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.514 kcal (2) G-P(sol) polarization free energy of solvation -28.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds