Wall clock time and date at job start Mon Mar 30 2020 02:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 H 1.08992 * 109.47047 * 299.99662 * 9 7 2 11 11 N 1.46901 * 109.47048 * 60.00279 * 9 7 2 12 12 C 1.50701 * 109.46837 * 179.97438 * 9 7 2 13 13 C 1.38285 * 119.92687 * 279.72561 * 12 9 7 14 14 C 1.38107 * 120.07400 * 179.72262 * 13 12 9 15 15 C 1.38912 * 119.92286 * 0.55459 * 14 13 12 16 16 N 1.39680 * 120.07211 * 179.74671 * 15 14 13 17 17 C 1.38905 * 119.85357 * 359.71940 * 15 14 13 18 18 C 1.38113 * 119.92514 * 0.02562 * 17 15 14 19 19 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 20 20 H 1.00899 * 111.00549 * 59.99564 * 11 9 7 21 21 H 1.00907 * 110.99790 * 183.95257 * 11 9 7 22 22 H 1.08000 * 119.96057 * 359.97438 * 13 12 9 23 23 H 1.08002 * 120.03436 * 180.27444 * 14 13 12 24 24 H 0.96999 * 120.00117 * 179.97438 * 16 15 14 25 25 H 0.97002 * 120.00014 * 359.97438 * 16 15 14 26 26 H 1.08001 * 120.03946 * 179.97438 * 17 15 14 27 27 H 1.07993 * 119.96267 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 1 3.8785 -0.6826 -0.8776 11 7 3.9961 -0.4988 1.2119 12 6 4.0137 -2.6150 0.0182 13 6 4.0477 -3.3296 1.2017 14 6 4.5020 -4.6338 1.2099 15 6 4.9358 -5.2238 0.0295 16 7 5.4009 -6.5409 0.0351 17 6 4.9056 -4.5014 -1.1565 18 6 4.4451 -3.1993 -1.1585 19 1 -0.4849 0.8401 -0.0004 20 1 3.6690 -0.9543 2.0508 21 1 5.0027 -0.4288 1.2074 22 1 3.7149 -2.8685 2.1199 23 1 4.5242 -5.1927 2.1337 24 1 5.7032 -6.9521 -0.7898 25 1 5.4215 -7.0445 0.8639 26 1 5.2425 -4.9571 -2.0759 27 1 4.4210 -2.6372 -2.0803 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104515777.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:40 Heat of formation + Delta-G solvation = 29.100461 kcal Electronic energy + Delta-G solvation = -11507.353744 eV Core-core repulsion = 9457.774764 eV Total energy + Delta-G solvation = -2049.578980 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.93180 -35.49995 -33.03905 -31.54822 -30.31752 -27.90240 -25.88969 -22.46030 -22.01408 -19.72785 -16.88046 -16.66615 -16.33329 -15.02983 -14.56170 -13.94615 -13.63823 -13.29240 -12.77553 -12.72210 -12.22339 -11.84458 -11.32266 -10.79844 -10.55477 -10.29366 -9.83384 -9.63846 -9.08614 -8.44912 -8.36344 -7.17046 -6.88304 -5.91845 -4.00627 1.99858 2.23291 3.57088 3.67040 3.99638 4.14394 4.49065 4.78671 5.36855 5.42826 5.47155 5.86470 5.99203 6.10133 6.13775 6.37252 6.55827 6.76059 6.94693 7.08482 7.40451 7.47551 7.73764 7.87949 7.99513 8.28408 8.44627 8.81655 9.10576 9.73371 11.18167 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.066489 B = 0.009876 C = 0.009690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.023745 B = 2834.609543 C = 2888.819155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.082 3.918 3 Si 0.867 3.133 4 H -0.298 1.298 5 H -0.306 1.306 6 H -0.192 1.192 7 C -0.516 4.516 8 H 0.068 0.932 9 C 0.222 3.778 10 H 0.041 0.959 11 N -0.835 5.835 12 C -0.118 4.118 13 C -0.073 4.073 14 C -0.197 4.197 15 C 0.187 3.813 16 N -0.889 5.889 17 C -0.198 4.198 18 C -0.075 4.075 19 H 0.261 0.739 20 H 0.328 0.672 21 H 0.307 0.693 22 H 0.117 0.883 23 H 0.109 0.891 24 H 0.392 0.608 25 H 0.392 0.608 26 H 0.109 0.891 27 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.485 -8.497 0.874 14.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.121 4.121 3 Si 0.694 3.306 4 H -0.226 1.226 5 H -0.233 1.233 6 H -0.113 1.113 7 C -0.554 4.554 8 H 0.086 0.914 9 C 0.113 3.887 10 H 0.059 0.941 11 N -0.364 5.364 12 C -0.122 4.122 13 C -0.092 4.092 14 C -0.219 4.219 15 C 0.086 3.914 16 N -0.429 5.429 17 C -0.220 4.220 18 C -0.094 4.094 19 H 0.071 0.929 20 H 0.142 0.858 21 H 0.118 0.882 22 H 0.135 0.865 23 H 0.127 0.873 24 H 0.219 0.781 25 H 0.219 0.781 26 H 0.127 0.873 27 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.896 -7.691 0.627 13.352 hybrid contribution 0.638 -0.577 0.093 0.866 sum 11.534 -8.268 0.719 14.210 Atomic orbital electron populations 1.69974 1.06989 1.27184 1.49932 1.25015 0.94497 1.00091 0.92535 0.87213 0.84633 0.81037 0.77740 1.22594 1.23312 1.11303 1.20801 0.87578 0.94352 1.52691 0.91384 1.18480 0.96116 0.84120 0.90028 0.94090 1.60081 1.12595 1.57867 1.05857 1.20985 0.98528 1.00157 0.92506 1.20707 0.97032 0.93132 0.98282 1.20472 1.08665 0.96705 0.96106 1.17666 0.94809 0.84906 0.94065 1.42327 1.75780 1.12446 1.12364 1.20482 1.09617 0.95974 0.95953 1.20831 0.96673 0.93944 0.97987 0.92940 0.85808 0.88238 0.86529 0.87262 0.78128 0.78122 0.87251 0.86534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.46 13.96 55.43 0.77 -27.69 15 2 C 0.08 2.42 5.47 -17.82 -0.10 2.32 15 3 Si 0.87 21.97 26.94 -169.99 -4.58 17.39 15 4 H -0.30 -7.67 7.11 56.52 0.40 -7.27 15 5 H -0.31 -7.97 7.11 56.52 0.40 -7.57 15 6 H -0.19 -4.47 5.17 56.52 0.29 -4.18 15 7 C -0.52 -14.67 9.29 -34.44 -0.32 -14.99 15 8 H 0.07 2.15 7.98 -52.49 -0.42 1.73 15 9 C 0.22 5.15 2.35 -70.02 -0.16 4.99 15 10 H 0.04 0.98 7.43 -51.93 -0.39 0.59 15 11 N -0.84 -17.40 5.65 -6.65 -0.04 -17.44 15 12 C -0.12 -2.43 4.89 -104.59 -0.51 -2.95 15 13 C -0.07 -1.37 9.28 -39.61 -0.37 -1.74 15 14 C -0.20 -3.27 9.90 -39.38 -0.39 -3.66 15 15 C 0.19 2.94 6.75 -83.79 -0.57 2.37 15 16 N -0.89 -10.19 9.09 32.41 0.29 -9.90 15 17 C -0.20 -3.26 9.90 -39.38 -0.39 -3.65 15 18 C -0.08 -1.42 9.66 -39.61 -0.38 -1.80 15 19 H 0.26 7.79 8.31 -40.82 -0.34 7.45 15 20 H 0.33 6.60 7.32 -39.29 -0.29 6.31 15 21 H 0.31 5.56 9.06 -39.29 -0.36 5.20 15 22 H 0.12 2.13 6.64 -52.49 -0.35 1.78 15 23 H 0.11 1.55 8.06 -52.49 -0.42 1.13 15 24 H 0.39 3.70 8.84 -40.82 -0.36 3.34 15 25 H 0.39 3.72 8.84 -40.82 -0.36 3.36 15 26 H 0.11 1.53 8.06 -52.49 -0.42 1.10 15 27 H 0.12 2.08 8.03 -52.49 -0.42 1.66 15 LS Contribution 231.08 15.07 3.48 3.48 Total: -1.00 -32.34 231.08 -6.29 -38.62 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -3.03 Total: 14.64 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -3.19 Total: -19.11 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 1.03 Total: -55.03 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.58 Total: 17.39 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -32.34 -6.29 -38.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104515777.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.725 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds