Wall clock time and date at job start Mon Mar 30 2020 02:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 H 1.08992 * 109.47047 * 299.99662 * 9 7 2 11 11 N 1.46901 * 109.47048 * 60.00279 * 9 7 2 12 12 C 1.50701 * 109.46837 * 179.97438 * 9 7 2 13 13 C 1.38285 * 119.92687 * 279.72561 * 12 9 7 14 14 C 1.38107 * 120.07400 * 179.72262 * 13 12 9 15 15 C 1.38912 * 119.92286 * 0.55459 * 14 13 12 16 16 N 1.39680 * 120.07211 * 179.74671 * 15 14 13 17 17 C 1.38905 * 119.85357 * 359.71940 * 15 14 13 18 18 C 1.38113 * 119.92514 * 0.02562 * 17 15 14 19 19 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 20 20 H 1.00899 * 111.00549 * 59.99564 * 11 9 7 21 21 H 1.00907 * 110.99790 * 183.95257 * 11 9 7 22 22 H 1.08000 * 119.96057 * 359.97438 * 13 12 9 23 23 H 1.08002 * 120.03436 * 180.27444 * 14 13 12 24 24 H 0.96999 * 120.00117 * 179.97438 * 16 15 14 25 25 H 0.97002 * 120.00014 * 359.97438 * 16 15 14 26 26 H 1.08001 * 120.03946 * 179.97438 * 17 15 14 27 27 H 1.07993 * 119.96267 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 1 3.8785 -0.6826 -0.8776 11 7 3.9961 -0.4988 1.2119 12 6 4.0137 -2.6150 0.0182 13 6 4.0477 -3.3296 1.2017 14 6 4.5020 -4.6338 1.2099 15 6 4.9358 -5.2238 0.0295 16 7 5.4009 -6.5409 0.0351 17 6 4.9056 -4.5014 -1.1565 18 6 4.4451 -3.1993 -1.1585 19 1 -0.4849 0.8401 -0.0004 20 1 3.6690 -0.9543 2.0508 21 1 5.0027 -0.4288 1.2074 22 1 3.7149 -2.8685 2.1199 23 1 4.5242 -5.1927 2.1337 24 1 5.7032 -6.9521 -0.7898 25 1 5.4215 -7.0445 0.8639 26 1 5.2425 -4.9571 -2.0759 27 1 4.4210 -2.6372 -2.0803 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104515777.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:40 Heat of formation + Delta-G solvation = 4.158533 kcal Electronic energy + Delta-G solvation = -11508.435307 eV Core-core repulsion = 9457.774764 eV Total energy + Delta-G solvation = -2050.660544 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.29794 -37.05164 -34.64599 -33.50881 -31.67074 -29.34748 -27.85254 -24.04978 -23.43683 -21.32965 -18.87631 -17.97495 -17.55638 -16.74962 -16.24009 -15.79298 -15.04621 -14.78793 -14.26966 -14.10533 -14.02223 -13.48480 -13.12593 -12.72253 -12.28926 -11.75638 -11.62518 -11.45193 -10.95311 -10.68440 -9.72149 -8.86541 -8.22349 -8.14172 -6.31305 0.64112 0.84805 1.54255 1.60744 1.98495 2.65729 3.08101 3.14119 3.20298 4.09143 4.22263 4.33465 4.39536 4.69806 4.74742 5.07205 5.09133 5.30314 5.49508 5.62419 5.66141 6.03761 6.09688 6.22656 6.58626 6.71749 6.84887 7.11988 7.12330 7.46670 8.94551 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.066489 B = 0.009876 C = 0.009690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.023745 B = 2834.609543 C = 2888.819155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.021 3.979 3 Si 0.932 3.068 4 H -0.301 1.301 5 H -0.316 1.316 6 H -0.155 1.155 7 C -0.512 4.512 8 H 0.019 0.981 9 C 0.232 3.768 10 H 0.037 0.963 11 N -0.836 5.836 12 C -0.154 4.154 13 C -0.082 4.082 14 C -0.203 4.203 15 C 0.198 3.802 16 N -0.870 5.870 17 C -0.202 4.202 18 C -0.088 4.088 19 H 0.261 0.739 20 H 0.334 0.666 21 H 0.329 0.671 22 H 0.115 0.885 23 H 0.135 0.865 24 H 0.405 0.595 25 H 0.405 0.595 26 H 0.137 0.863 27 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.003 -9.527 1.152 16.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.177 4.177 3 Si 0.757 3.243 4 H -0.229 1.229 5 H -0.245 1.245 6 H -0.075 1.075 7 C -0.550 4.550 8 H 0.038 0.962 9 C 0.122 3.878 10 H 0.055 0.945 11 N -0.366 5.366 12 C -0.158 4.158 13 C -0.101 4.101 14 C -0.226 4.226 15 C 0.093 3.907 16 N -0.411 5.411 17 C -0.224 4.224 18 C -0.108 4.108 19 H 0.069 0.931 20 H 0.148 0.852 21 H 0.142 0.858 22 H 0.133 0.867 23 H 0.153 0.847 24 H 0.235 0.765 25 H 0.234 0.766 26 H 0.155 0.845 27 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 13.461 -8.783 0.910 16.098 hybrid contribution -0.125 -0.483 -0.003 0.499 sum 13.335 -9.265 0.906 16.263 Atomic orbital electron populations 1.70128 1.08984 1.27952 1.52604 1.25973 0.95141 1.04084 0.92472 0.86277 0.84527 0.75830 0.77617 1.22936 1.24465 1.07535 1.21064 0.90661 0.92172 1.51137 0.96235 1.18120 0.92556 0.86542 0.90629 0.94528 1.59736 1.14296 1.57441 1.05150 1.20765 1.01607 0.99287 0.94125 1.20775 0.97456 0.94266 0.97634 1.20718 1.08187 0.95999 0.97676 1.17786 0.93229 0.86256 0.93409 1.42283 1.74107 1.10807 1.13908 1.20729 1.09085 0.95123 0.97512 1.20962 0.97111 0.95235 0.97444 0.93084 0.85246 0.85805 0.86747 0.84723 0.76542 0.76579 0.84532 0.86474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.45 13.96 21.45 0.30 -62.15 15 2 C 0.02 1.26 5.47 84.66 0.46 1.72 15 3 Si 0.93 45.81 26.94 68.60 1.85 47.66 15 4 H -0.30 -14.88 7.11 99.48 0.71 -14.17 15 5 H -0.32 -16.01 7.11 99.48 0.71 -15.30 15 6 H -0.15 -6.69 5.17 99.48 0.51 -6.17 15 7 C -0.51 -29.91 9.29 25.60 0.24 -29.68 15 8 H 0.02 1.29 7.98 -2.91 -0.02 1.26 15 9 C 0.23 10.69 2.35 43.42 0.10 10.79 15 10 H 0.04 1.72 7.43 -2.39 -0.02 1.70 15 11 N -0.84 -33.40 5.65 -174.96 -0.99 -34.39 15 12 C -0.15 -6.28 4.89 -19.84 -0.10 -6.38 15 13 C -0.08 -3.02 9.28 22.25 0.21 -2.82 15 14 C -0.20 -6.24 9.90 22.40 0.22 -6.01 15 15 C 0.20 5.56 6.75 38.21 0.26 5.82 15 16 N -0.87 -16.33 9.09 -51.37 -0.47 -16.80 15 17 C -0.20 -6.14 9.90 22.40 0.22 -5.92 15 18 C -0.09 -3.24 9.66 22.25 0.21 -3.03 15 19 H 0.26 16.11 8.31 -92.71 -0.77 15.34 15 20 H 0.33 13.00 7.32 -89.69 -0.66 12.34 15 21 H 0.33 11.05 9.06 -89.69 -0.81 10.23 15 22 H 0.11 4.12 6.64 -2.91 -0.02 4.10 15 23 H 0.13 3.37 8.06 -2.91 -0.02 3.34 15 24 H 0.41 5.86 8.84 -92.71 -0.82 5.04 15 25 H 0.40 5.92 8.84 -92.71 -0.82 5.10 15 26 H 0.14 3.33 8.06 -2.91 -0.02 3.31 15 27 H 0.12 4.14 8.03 -2.91 -0.02 4.12 15 Total: -1.00 -71.37 231.08 0.44 -70.93 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: -2.08 Total: 30.25 kcal Atomic # 6 Polarization: -37.33 SS G_CDS: 1.83 Total: -35.51 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -1.16 Total: -113.34 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.85 Total: 47.66 kcal Total: -71.37 0.44 -70.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104515777.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.093 kcal (2) G-P(sol) polarization free energy of solvation -71.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds