Wall clock time and date at job start Mon Mar 30 2020 02:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00163 * 2 1 4 4 H 1.48491 * 109.47395 * 264.99204 * 3 2 1 5 5 H 1.48505 * 109.46820 * 24.99687 * 3 2 1 6 6 H 1.48504 * 109.46600 * 144.99078 * 3 2 1 7 7 C 1.37875 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99946 * 189.57004 * 7 2 1 9 9 C 1.50706 * 120.00029 * 9.56097 * 7 2 1 10 10 H 1.08998 * 109.47208 * 305.43067 * 9 7 2 11 11 N 1.46903 * 109.46633 * 65.42764 * 9 7 2 12 12 C 1.50695 * 109.47068 * 185.42575 * 9 7 2 13 13 C 1.38129 * 120.04091 * 264.72535 * 12 9 7 14 14 C 1.38254 * 120.07772 * 180.27495 * 13 12 9 15 15 C 1.38312 * 120.15174 * 0.02562 * 14 13 12 16 16 C 1.38082 * 120.07118 * 359.97438 * 15 14 13 17 17 C 1.38896 * 120.03625 * 85.00195 * 12 9 7 18 18 N 1.39675 * 120.07468 * 359.74841 * 17 12 9 19 19 H 0.97002 * 119.99713 * 359.97438 * 1 2 3 20 20 H 1.00898 * 111.00190 * 293.33573 * 11 9 7 21 21 H 1.00906 * 111.00104 * 57.29347 * 11 9 7 22 22 H 1.08003 * 119.95718 * 0.25617 * 13 12 9 23 23 H 1.08007 * 119.92648 * 180.02562 * 14 13 12 24 24 H 1.07997 * 119.96676 * 180.02562 * 15 14 13 25 25 H 1.08005 * 120.03816 * 180.02562 * 16 15 14 26 26 H 0.96995 * 119.99793 * 359.97438 * 18 17 12 27 27 H 0.96994 * 119.99468 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6026 1.9853 -1.3946 5 1 1.3977 2.6809 0.5917 6 1 3.4898 1.4729 0.8033 7 6 2.0045 -1.1941 -0.0005 8 1 3.0732 -1.2007 0.1550 9 6 1.2666 -2.4900 -0.2179 10 1 0.4559 -2.5724 0.5060 11 7 0.7128 -2.5158 -1.5783 12 6 2.2177 -3.6454 -0.0407 13 6 2.8399 -4.2038 -1.1403 14 6 3.7083 -5.2674 -0.9793 15 6 3.9567 -5.7765 0.2825 16 6 3.3382 -5.2231 1.3861 17 6 2.4654 -4.1538 1.2279 18 7 1.8376 -3.5920 2.3420 19 1 -0.4850 0.8401 0.0004 20 1 -0.0077 -1.8181 -1.6887 21 1 1.4403 -2.3966 -2.2672 22 1 2.6475 -3.8091 -2.1271 23 1 4.1937 -5.7019 -1.8407 24 1 4.6359 -6.6072 0.4050 25 1 3.5329 -5.6208 2.3712 26 1 1.2282 -2.8457 2.2302 27 1 2.0111 -3.9481 3.2273 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104524906.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:42 Heat of formation + Delta-G solvation = 16.354461 kcal Electronic energy + Delta-G solvation = -11730.975480 eV Core-core repulsion = 9680.843792 eV Total energy + Delta-G solvation = -2050.131688 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.72451 -34.58884 -33.61490 -31.61579 -29.09742 -27.73840 -25.89204 -22.99480 -21.20998 -19.65826 -16.55200 -16.48314 -16.08305 -14.98198 -14.36833 -13.90521 -13.15437 -12.99745 -12.87841 -12.22826 -12.03087 -11.43341 -11.14695 -11.00555 -10.61000 -10.25037 -10.06541 -9.85864 -9.38315 -8.62557 -7.88063 -7.28282 -6.64444 -6.09193 -4.24323 2.31232 2.46612 3.21741 3.29093 3.33177 4.31623 4.71548 4.80869 5.11656 5.64551 5.73536 5.94219 6.13851 6.40340 6.62471 6.69706 6.85799 7.09121 7.23207 7.44183 7.70276 7.75359 7.77316 8.12913 8.35131 8.61912 8.70094 8.86200 9.03169 9.44581 10.87297 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.045843 B = 0.011849 C = 0.011333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.633984 B = 2362.439806 C = 2469.962938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.247 3.753 10 H 0.048 0.952 11 N -0.848 5.848 12 C -0.104 4.104 13 C -0.070 4.070 14 C -0.189 4.189 15 C -0.100 4.100 16 C -0.213 4.213 17 C 0.216 3.784 18 N -0.875 5.875 19 H 0.264 0.736 20 H 0.343 0.657 21 H 0.314 0.686 22 H 0.117 0.883 23 H 0.104 0.896 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.408 0.592 27 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.986 -5.923 1.368 7.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.073 0.927 9 C 0.137 3.863 10 H 0.066 0.934 11 N -0.376 5.376 12 C -0.109 4.109 13 C -0.089 4.089 14 C -0.209 4.209 15 C -0.119 4.119 16 C -0.236 4.236 17 C 0.111 3.889 18 N -0.414 5.414 19 H 0.074 0.926 20 H 0.156 0.844 21 H 0.124 0.876 22 H 0.135 0.865 23 H 0.123 0.877 24 H 0.124 0.876 25 H 0.124 0.876 26 H 0.239 0.761 27 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 3.581 -6.555 1.525 7.624 hybrid contribution 0.762 2.151 0.316 2.304 sum 4.343 -4.404 1.842 6.453 Atomic orbital electron populations 1.69911 1.05803 1.27132 1.50021 1.25027 0.94839 0.99220 0.94462 0.86616 0.79905 0.83166 0.78375 1.20523 1.21282 1.19984 1.21813 0.94744 0.91283 1.50293 0.92689 1.17760 0.91327 0.88416 0.88814 0.93382 1.59498 1.16353 1.56289 1.05442 1.19970 1.01144 0.99052 0.90733 1.20701 0.94924 0.94896 0.98409 1.20756 1.03269 1.00412 0.96483 1.20570 0.99450 0.99261 0.92634 1.20370 1.04079 1.00765 0.98384 1.17644 0.91782 0.91730 0.87784 1.42544 1.52802 1.40281 1.05784 0.92604 0.84378 0.87554 0.86515 0.87737 0.87646 0.87599 0.76095 0.78893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.17 12.32 55.43 0.68 -23.49 15 2 C 0.07 1.79 5.32 -17.82 -0.09 1.69 15 3 Si 0.89 20.84 29.55 -169.99 -5.02 15.82 15 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 15 7 C -0.54 -14.34 8.63 -34.44 -0.30 -14.64 15 8 H 0.05 1.52 7.76 -52.48 -0.41 1.11 15 9 C 0.25 6.07 2.23 -70.01 -0.16 5.91 15 10 H 0.05 1.29 6.77 -51.93 -0.35 0.94 15 11 N -0.85 -19.92 8.73 -6.65 -0.06 -19.98 15 12 C -0.10 -2.34 5.01 -104.42 -0.52 -2.86 15 13 C -0.07 -1.44 9.27 -39.62 -0.37 -1.81 15 14 C -0.19 -3.43 10.04 -39.55 -0.40 -3.82 15 15 C -0.10 -1.73 10.04 -39.61 -0.40 -2.13 15 16 C -0.21 -3.85 9.90 -39.38 -0.39 -4.24 15 17 C 0.22 4.41 6.74 -83.78 -0.56 3.85 15 18 N -0.87 -16.07 8.99 32.41 0.29 -15.78 15 19 H 0.26 6.90 8.31 -40.82 -0.34 6.56 15 20 H 0.34 8.50 7.96 -39.29 -0.31 8.19 15 21 H 0.31 7.01 7.34 -39.29 -0.29 6.73 15 22 H 0.12 2.32 6.36 -52.48 -0.33 1.98 15 23 H 0.10 1.62 8.06 -52.48 -0.42 1.19 15 24 H 0.11 1.49 8.06 -52.49 -0.42 1.07 15 25 H 0.11 1.64 8.06 -52.48 -0.42 1.21 15 26 H 0.41 8.20 6.94 -40.82 -0.28 7.91 15 27 H 0.38 5.71 8.84 -40.82 -0.36 5.34 15 LS Contribution 232.55 15.07 3.50 3.50 Total: -1.00 -27.64 232.55 -6.53 -34.17 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: -2.74 Total: 23.80 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -3.19 Total: -18.05 kcal Atomic # 7 Polarization: -60.16 SS G_CDS: 0.92 Total: -59.24 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -27.64 -6.53 -34.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104524906.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.527 kcal (2) G-P(sol) polarization free energy of solvation -27.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds