Wall clock time and date at job start Mon Mar 30 2020 02:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00163 * 2 1 4 4 H 1.48491 * 109.47395 * 264.99204 * 3 2 1 5 5 H 1.48505 * 109.46820 * 24.99687 * 3 2 1 6 6 H 1.48504 * 109.46600 * 144.99078 * 3 2 1 7 7 C 1.37875 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99946 * 189.57004 * 7 2 1 9 9 C 1.50706 * 120.00029 * 9.56097 * 7 2 1 10 10 H 1.08998 * 109.47208 * 305.43067 * 9 7 2 11 11 N 1.46903 * 109.46633 * 65.42764 * 9 7 2 12 12 C 1.50695 * 109.47068 * 185.42575 * 9 7 2 13 13 C 1.38129 * 120.04091 * 264.72535 * 12 9 7 14 14 C 1.38254 * 120.07772 * 180.27495 * 13 12 9 15 15 C 1.38312 * 120.15174 * 0.02562 * 14 13 12 16 16 C 1.38082 * 120.07118 * 359.97438 * 15 14 13 17 17 C 1.38896 * 120.03625 * 85.00195 * 12 9 7 18 18 N 1.39675 * 120.07468 * 359.74841 * 17 12 9 19 19 H 0.97002 * 119.99713 * 359.97438 * 1 2 3 20 20 H 1.00898 * 111.00190 * 293.33573 * 11 9 7 21 21 H 1.00906 * 111.00104 * 57.29347 * 11 9 7 22 22 H 1.08003 * 119.95718 * 0.25617 * 13 12 9 23 23 H 1.08007 * 119.92648 * 180.02562 * 14 13 12 24 24 H 1.07997 * 119.96676 * 180.02562 * 15 14 13 25 25 H 1.08005 * 120.03816 * 180.02562 * 16 15 14 26 26 H 0.96995 * 119.99793 * 359.97438 * 18 17 12 27 27 H 0.96994 * 119.99468 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6026 1.9853 -1.3946 5 1 1.3977 2.6809 0.5917 6 1 3.4898 1.4729 0.8033 7 6 2.0045 -1.1941 -0.0005 8 1 3.0732 -1.2007 0.1550 9 6 1.2666 -2.4900 -0.2179 10 1 0.4559 -2.5724 0.5060 11 7 0.7128 -2.5158 -1.5783 12 6 2.2177 -3.6454 -0.0407 13 6 2.8399 -4.2038 -1.1403 14 6 3.7083 -5.2674 -0.9793 15 6 3.9567 -5.7765 0.2825 16 6 3.3382 -5.2231 1.3861 17 6 2.4654 -4.1538 1.2279 18 7 1.8376 -3.5920 2.3420 19 1 -0.4850 0.8401 0.0004 20 1 -0.0077 -1.8181 -1.6887 21 1 1.4403 -2.3966 -2.2672 22 1 2.6475 -3.8091 -2.1271 23 1 4.1937 -5.7019 -1.8407 24 1 4.6359 -6.6072 0.4050 25 1 3.5329 -5.6208 2.3712 26 1 1.2282 -2.8457 2.2302 27 1 2.0111 -3.9481 3.2273 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104524906.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:42 Heat of formation + Delta-G solvation = -3.162666 kcal Electronic energy + Delta-G solvation = -11731.821806 eV Core-core repulsion = 9680.843792 eV Total energy + Delta-G solvation = -2050.978015 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.24182 -36.42760 -35.08868 -33.55450 -30.69806 -29.25357 -27.84309 -24.74336 -22.70784 -21.30611 -18.55644 -18.04326 -17.59574 -16.72934 -16.07195 -15.55928 -14.90580 -14.52180 -14.47857 -13.84872 -13.77847 -13.10194 -12.98929 -12.87663 -12.43504 -12.01365 -11.73161 -11.29784 -11.15542 -10.65673 -9.43756 -9.19815 -8.27291 -7.97704 -6.33316 0.82104 0.99236 1.35396 1.38659 1.46864 2.37080 3.05432 3.24937 3.33017 4.26204 4.29819 4.43683 4.65155 4.88053 4.95967 5.20734 5.26642 5.45022 5.64381 5.75768 5.92486 6.02803 6.14587 6.31389 6.69392 6.83029 6.88597 7.08091 7.22782 7.39231 8.83275 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.045843 B = 0.011849 C = 0.011333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.633984 B = 2362.439806 C = 2469.962938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.028 3.972 3 Si 0.950 3.050 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.548 4.548 8 H 0.038 0.962 9 C 0.255 3.745 10 H 0.018 0.982 11 N -0.841 5.841 12 C -0.144 4.144 13 C -0.084 4.084 14 C -0.191 4.191 15 C -0.092 4.092 16 C -0.213 4.213 17 C 0.197 3.803 18 N -0.872 5.872 19 H 0.266 0.734 20 H 0.334 0.666 21 H 0.320 0.680 22 H 0.114 0.886 23 H 0.134 0.866 24 H 0.146 0.854 25 H 0.135 0.865 26 H 0.397 0.603 27 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.466 -6.879 1.556 8.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.173 4.173 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.203 1.203 7 C -0.588 4.588 8 H 0.056 0.944 9 C 0.145 3.855 10 H 0.036 0.964 11 N -0.367 5.367 12 C -0.149 4.149 13 C -0.103 4.103 14 C -0.211 4.211 15 C -0.111 4.111 16 C -0.235 4.235 17 C 0.091 3.909 18 N -0.411 5.411 19 H 0.075 0.925 20 H 0.145 0.855 21 H 0.131 0.869 22 H 0.132 0.868 23 H 0.152 0.848 24 H 0.163 0.837 25 H 0.153 0.847 26 H 0.226 0.774 27 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 5.076 -7.534 1.726 9.247 hybrid contribution 0.331 2.365 0.268 2.403 sum 5.407 -5.169 1.993 7.741 Atomic orbital electron populations 1.69998 1.06776 1.27786 1.50502 1.25643 0.95535 1.01870 0.94214 0.85710 0.78567 0.79816 0.78307 1.20104 1.20795 1.20256 1.21904 0.93906 0.92639 1.50368 0.94374 1.17527 0.90752 0.89050 0.88213 0.96388 1.59477 1.16223 1.55615 1.05413 1.19926 1.02653 0.99800 0.92560 1.20833 0.95736 0.95964 0.97801 1.21091 1.02404 0.99399 0.98235 1.21067 0.98780 0.99447 0.91760 1.20755 1.02875 0.99616 1.00299 1.17921 0.92693 0.92729 0.87528 1.42488 1.52367 1.39865 1.06395 0.92506 0.85478 0.86886 0.86821 0.84839 0.83678 0.84693 0.77363 0.77020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.13 12.32 21.45 0.26 -49.87 15 2 C 0.03 1.51 5.32 84.65 0.45 1.96 15 3 Si 0.95 42.91 29.55 68.60 2.03 44.94 15 4 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 5 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 15 7 C -0.55 -29.54 8.63 25.60 0.22 -29.32 15 8 H 0.04 2.14 7.76 -2.91 -0.02 2.12 15 9 C 0.25 12.83 2.23 43.42 0.10 12.93 15 10 H 0.02 1.01 6.77 -2.39 -0.02 1.00 15 11 N -0.84 -40.31 8.73 -174.95 -1.53 -41.83 15 12 C -0.14 -6.50 5.01 -19.73 -0.10 -6.60 15 13 C -0.08 -3.41 9.27 22.25 0.21 -3.20 15 14 C -0.19 -6.40 10.04 22.29 0.22 -6.17 15 15 C -0.09 -2.82 10.04 22.25 0.22 -2.60 15 16 C -0.21 -7.07 9.90 22.40 0.22 -6.85 15 17 C 0.20 7.89 6.74 38.22 0.26 8.15 15 18 N -0.87 -31.88 8.99 -51.37 -0.46 -32.34 15 19 H 0.27 13.96 8.31 -92.71 -0.77 13.19 15 20 H 0.33 16.94 7.96 -89.70 -0.71 16.22 15 21 H 0.32 14.53 7.34 -89.69 -0.66 13.87 15 22 H 0.11 4.50 6.36 -2.91 -0.02 4.48 15 23 H 0.13 3.63 8.06 -2.91 -0.02 3.60 15 24 H 0.15 3.30 8.06 -2.91 -0.02 3.27 15 25 H 0.14 3.63 8.06 -2.91 -0.02 3.61 15 26 H 0.40 16.39 6.94 -92.71 -0.64 15.75 15 27 H 0.40 11.49 8.84 -92.71 -0.82 10.67 15 Total: -1.00 -58.63 232.55 0.49 -58.13 By element: Atomic # 1 Polarization: 54.28 SS G_CDS: -1.61 Total: 52.67 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 1.80 Total: -31.70 kcal Atomic # 7 Polarization: -122.31 SS G_CDS: -1.72 Total: -124.04 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -58.63 0.49 -58.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104524906.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.972 kcal (2) G-P(sol) polarization free energy of solvation -58.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds