Wall clock time and date at job start Mon Mar 30 2020 02:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99994 * 2 1 4 4 H 1.48501 * 109.47201 * 270.00321 * 3 2 1 5 5 H 1.48499 * 109.47088 * 30.00655 * 3 2 1 6 6 H 1.48500 * 109.47084 * 150.00316 * 3 2 1 7 7 C 1.37874 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00266 * 359.97438 * 7 2 1 9 9 C 1.50709 * 119.99968 * 179.97438 * 7 2 1 10 10 H 1.08998 * 109.46875 * 60.00405 * 9 7 2 11 11 N 1.46900 * 109.47242 * 300.00248 * 9 7 2 12 12 C 1.50702 * 109.47046 * 180.02562 * 9 7 2 13 13 C 1.38292 * 119.92237 * 260.00266 * 12 9 7 14 14 C 1.38105 * 120.06995 * 179.97438 * 13 12 9 15 15 C 1.38906 * 119.92826 * 359.97438 * 14 13 12 16 16 N 1.39670 * 120.07526 * 179.97438 * 15 14 13 17 17 C 1.38916 * 119.85278 * 359.97438 * 15 14 13 18 18 C 1.38107 * 119.92024 * 0.02562 * 17 15 14 19 19 H 0.96999 * 120.00305 * 359.97438 * 1 2 3 20 20 H 1.00894 * 110.99835 * 176.04361 * 11 9 7 21 21 H 1.00899 * 110.99892 * 300.00144 * 11 9 7 22 22 H 1.07992 * 119.96277 * 0.25748 * 13 12 9 23 23 H 1.08001 * 120.03535 * 180.02562 * 14 13 12 24 24 H 0.96998 * 120.00321 * 359.97438 * 16 15 14 25 25 H 0.97005 * 119.99860 * 179.97438 * 16 15 14 26 26 H 1.08000 * 120.03974 * 179.97438 * 17 15 14 27 27 H 1.07998 * 119.96049 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8752 -0.6805 0.8889 11 7 4.0008 -0.5012 -1.2005 12 6 4.0139 -2.6149 -0.0023 13 6 4.4404 -3.1967 1.1776 14 6 4.9009 -4.4987 1.1801 15 6 4.9347 -5.2242 -0.0040 16 7 5.4002 -6.5410 -0.0051 17 6 4.5044 -4.6370 -1.1872 18 6 4.0452 -3.3346 -1.1826 19 1 -0.4850 0.8400 0.0004 20 1 5.0073 -0.4311 -1.1923 21 1 3.6769 -0.9585 -2.0396 22 1 4.4092 -2.6338 2.0986 23 1 5.2335 -4.9527 2.1019 24 1 5.7007 -6.9499 0.8216 25 1 5.4230 -7.0467 -0.8325 26 1 4.5298 -5.1981 -2.1096 27 1 3.7110 -2.8773 -2.1022 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104573608.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:43 Heat of formation + Delta-G solvation = 21.664590 kcal Electronic energy + Delta-G solvation = -11504.438086 eV Core-core repulsion = 9454.536663 eV Total energy + Delta-G solvation = -2049.901424 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.93830 -35.51039 -33.05119 -31.57536 -30.32332 -27.91644 -25.92310 -22.46975 -22.01957 -19.74724 -16.91329 -16.67761 -16.35413 -15.04463 -14.62850 -13.95463 -13.63763 -13.31613 -12.78651 -12.72605 -12.24903 -11.85823 -11.37847 -10.71163 -10.56308 -10.35003 -9.84740 -9.57956 -9.11268 -8.46698 -8.36949 -7.60944 -6.92209 -5.93857 -4.03115 1.99435 2.22615 3.61947 3.66063 3.79692 4.13975 4.48411 4.71526 5.32415 5.41022 5.46774 5.85826 5.97455 6.09071 6.13079 6.36586 6.55484 6.75843 6.94939 7.07749 7.39836 7.46330 7.72289 7.87413 7.99114 8.24233 8.40904 8.78231 9.07997 9.70016 11.15788 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.066487 B = 0.009877 C = 0.009691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 421.032371 B = 2834.318861 C = 2888.654236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.079 3.921 3 Si 0.938 3.062 4 H -0.281 1.281 5 H -0.320 1.320 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.070 0.930 9 C 0.219 3.781 10 H 0.046 0.954 11 N -0.841 5.841 12 C -0.118 4.118 13 C -0.074 4.074 14 C -0.198 4.198 15 C 0.188 3.812 16 N -0.888 5.888 17 C -0.197 4.197 18 C -0.072 4.072 19 H 0.262 0.738 20 H 0.310 0.690 21 H 0.333 0.667 22 H 0.117 0.883 23 H 0.110 0.890 24 H 0.392 0.608 25 H 0.392 0.608 26 H 0.109 0.891 27 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.090 -8.622 -0.594 14.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.125 4.125 3 Si 0.770 3.230 4 H -0.207 1.207 5 H -0.250 1.250 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.088 0.912 9 C 0.109 3.891 10 H 0.064 0.936 11 N -0.371 5.371 12 C -0.122 4.122 13 C -0.094 4.094 14 C -0.220 4.220 15 C 0.086 3.914 16 N -0.429 5.429 17 C -0.220 4.220 18 C -0.091 4.091 19 H 0.072 0.928 20 H 0.121 0.879 21 H 0.147 0.853 22 H 0.135 0.865 23 H 0.128 0.872 24 H 0.219 0.781 25 H 0.219 0.781 26 H 0.128 0.872 27 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.486 -7.820 -0.338 13.085 hybrid contribution 0.863 -0.568 -0.242 1.061 sum 11.348 -8.388 -0.580 14.124 Atomic orbital electron populations 1.69968 1.06821 1.27231 1.50006 1.25049 0.94594 1.00105 0.92710 0.85841 0.78381 0.80765 0.77972 1.20725 1.25019 1.19989 1.20829 0.87557 0.94426 1.52359 0.91168 1.18617 0.96125 0.84265 0.90047 0.93583 1.59380 1.12902 1.58556 1.06234 1.20967 0.98633 1.00046 0.92559 1.20829 0.96623 0.93950 0.97960 1.20479 1.09639 0.95928 0.95976 1.17667 0.94780 0.84902 0.94059 1.42326 1.75805 1.12435 1.12335 1.20472 1.08663 0.96758 0.96071 1.20703 0.96998 0.93121 0.98305 0.92835 0.87887 0.85312 0.86503 0.87229 0.78120 0.78116 0.87248 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.25 13.96 55.43 0.77 -27.48 15 2 C 0.08 2.33 5.47 -17.82 -0.10 2.23 15 3 Si 0.94 24.25 26.03 -169.99 -4.42 19.83 15 4 H -0.28 -7.25 7.11 56.52 0.40 -6.85 15 5 H -0.32 -8.37 7.11 56.52 0.40 -7.97 15 6 H -0.27 -6.88 6.54 56.52 0.37 -6.51 15 7 C -0.51 -14.63 9.28 -34.44 -0.32 -14.95 15 8 H 0.07 2.21 7.98 -52.49 -0.42 1.79 15 9 C 0.22 5.15 2.34 -70.01 -0.16 4.98 15 10 H 0.05 1.13 7.06 -51.93 -0.37 0.76 15 11 N -0.84 -17.93 6.59 -6.65 -0.04 -17.97 15 12 C -0.12 -2.45 4.89 -104.59 -0.51 -2.96 15 13 C -0.07 -1.41 9.66 -39.61 -0.38 -1.79 15 14 C -0.20 -3.26 9.90 -39.38 -0.39 -3.65 15 15 C 0.19 2.94 6.75 -83.79 -0.57 2.37 15 16 N -0.89 -10.17 9.09 32.41 0.29 -9.88 15 17 C -0.20 -3.27 9.90 -39.38 -0.39 -3.66 15 18 C -0.07 -1.37 9.28 -39.61 -0.37 -1.74 15 19 H 0.26 7.74 8.31 -40.82 -0.34 7.40 15 20 H 0.31 5.72 9.06 -39.29 -0.36 5.36 15 21 H 0.33 6.78 7.33 -39.29 -0.29 6.50 15 22 H 0.12 2.10 8.03 -52.49 -0.42 1.68 15 23 H 0.11 1.53 8.06 -52.49 -0.42 1.11 15 24 H 0.39 3.69 8.84 -40.82 -0.36 3.33 15 25 H 0.39 3.71 8.84 -40.82 -0.36 3.35 15 26 H 0.11 1.55 8.06 -52.49 -0.42 1.13 15 27 H 0.12 2.13 6.66 -52.49 -0.35 1.78 15 LS Contribution 232.12 15.07 3.50 3.50 Total: -1.00 -32.29 232.12 -6.02 -38.32 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -2.93 Total: 12.85 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -3.19 Total: -19.16 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: 1.02 Total: -55.33 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -4.42 Total: 19.83 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -32.29 -6.02 -38.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104573608.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.983 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds