Wall clock time and date at job start Mon Mar 30 2020 02:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99848 * 2 1 4 4 H 1.48500 * 109.47051 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47248 * 119.99920 * 3 2 1 6 6 H 1.48493 * 109.47198 * 239.99875 * 3 2 1 7 7 C 1.37878 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00142 * 343.62660 * 7 2 1 9 9 C 1.50695 * 119.99712 * 163.61813 * 7 2 1 10 10 H 1.09002 * 109.47236 * 54.41093 * 9 7 2 11 11 N 1.46899 * 109.47592 * 294.40858 * 9 7 2 12 12 C 1.50703 * 109.47271 * 174.40416 * 9 7 2 13 13 C 1.38308 * 119.96085 * 80.00054 * 12 9 7 14 14 C 1.38260 * 120.15316 * 180.02562 * 13 12 9 15 15 C 1.38123 * 120.07116 * 359.97438 * 14 13 12 16 16 C 1.38891 * 119.92774 * 359.97438 * 15 14 13 17 17 N 1.39674 * 120.07493 * 180.02562 * 16 15 14 18 18 C 1.38079 * 119.96614 * 259.73111 * 12 9 7 19 19 H 0.97003 * 119.99899 * 174.63558 * 1 2 3 20 20 H 1.00904 * 110.99817 * 305.80564 * 11 9 7 21 21 H 1.00900 * 111.00320 * 69.75583 * 11 9 7 22 22 H 1.08002 * 119.92206 * 0.02562 * 13 12 9 23 23 H 1.08000 * 119.96482 * 180.02562 * 14 13 12 24 24 H 1.08008 * 120.03726 * 180.02562 * 15 14 13 25 25 H 0.96991 * 120.00174 * 0.02562 * 17 16 15 26 26 H 0.97004 * 119.99990 * 179.97438 * 17 16 15 27 27 H 1.08004 * 120.03556 * 359.97438 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 1.4974 -2.1102 0.2646 9 6 3.4656 -1.2206 -0.3675 10 1 4.0115 -0.5168 0.2608 11 7 3.6223 -0.8412 -1.7780 12 6 4.0115 -2.6095 -0.1573 13 6 3.7895 -3.5900 -1.1072 14 6 4.2880 -4.8657 -0.9181 15 6 5.0102 -5.1648 0.2206 16 6 5.2359 -4.1823 1.1760 17 7 5.9663 -4.4812 2.3285 18 6 4.7374 -2.9003 0.9807 19 1 -0.4850 -0.8364 -0.0785 20 1 3.0501 -1.4204 -2.3740 21 1 3.4130 0.1363 -1.9149 22 1 3.2255 -3.3586 -1.9987 23 1 4.1132 -5.6289 -1.6620 24 1 5.3998 -6.1614 0.3676 25 1 6.3168 -5.3757 2.4621 26 1 6.1236 -3.7941 2.9949 27 1 4.9144 -2.1329 1.7198 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104579037.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:02 Heat of formation + Delta-G solvation = 17.417775 kcal Electronic energy + Delta-G solvation = -11548.581368 eV Core-core repulsion = 9498.495788 eV Total energy + Delta-G solvation = -2050.085580 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.79928 -35.32381 -33.43296 -31.75918 -29.82477 -27.77509 -25.73486 -22.63372 -21.64989 -19.58410 -17.67335 -16.40793 -16.31975 -15.15961 -14.83446 -13.77478 -13.56606 -12.99533 -12.95992 -12.47143 -12.20429 -11.99589 -11.38716 -10.71182 -10.53390 -10.13748 -9.99221 -9.84925 -9.25387 -8.50690 -8.10427 -7.49748 -6.99323 -6.46180 -4.21261 2.16284 2.34532 3.27625 3.36521 3.53388 4.24485 4.38316 4.62866 5.15554 5.49390 5.59973 5.85109 6.13580 6.21872 6.31578 6.37668 6.69995 6.84473 6.97426 7.23541 7.46348 7.67043 7.83982 8.01070 8.11024 8.24648 8.43286 8.56180 8.85585 9.49452 10.81669 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.049790 B = 0.010958 C = 0.010378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.221417 B = 2554.683467 C = 2697.488964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.032 3.968 3 Si 1.044 2.956 4 H -0.284 1.284 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.623 4.623 8 H 0.058 0.942 9 C 0.209 3.791 10 H 0.041 0.959 11 N -0.856 5.856 12 C 0.028 3.972 13 C -0.161 4.161 14 C -0.081 4.081 15 C -0.223 4.223 16 C 0.206 3.794 17 N -0.887 5.887 18 C -0.200 4.200 19 H 0.270 0.730 20 H 0.328 0.672 21 H 0.327 0.673 22 H 0.113 0.887 23 H 0.110 0.890 24 H 0.107 0.893 25 H 0.391 0.609 26 H 0.393 0.607 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.662 -6.026 0.992 11.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.174 4.174 3 Si 0.872 3.128 4 H -0.210 1.210 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.662 4.662 8 H 0.077 0.923 9 C 0.099 3.901 10 H 0.058 0.942 11 N -0.387 5.387 12 C 0.026 3.974 13 C -0.181 4.181 14 C -0.100 4.100 15 C -0.246 4.246 16 C 0.104 3.896 17 N -0.427 5.427 18 C -0.223 4.223 19 H 0.080 0.920 20 H 0.140 0.860 21 H 0.142 0.858 22 H 0.131 0.869 23 H 0.128 0.872 24 H 0.125 0.875 25 H 0.218 0.782 26 H 0.221 0.779 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 10.185 -4.559 1.117 11.215 hybrid contribution -0.758 -1.641 0.452 1.863 sum 9.428 -6.199 1.569 11.392 Atomic orbital electron populations 1.70819 1.07019 1.30652 1.44756 1.25836 0.96230 1.02372 0.92957 0.84016 0.75341 0.76128 0.77335 1.20950 1.20845 1.20075 1.22613 0.94304 0.96700 1.52596 0.92339 1.18315 0.95198 0.89222 0.87341 0.94160 1.59735 1.62581 1.08184 1.08209 1.19837 0.89783 0.96434 0.91319 1.20675 1.04076 0.92744 1.00579 1.20764 0.96662 0.96339 0.96230 1.20297 1.09194 0.98069 0.97014 1.17693 0.91535 0.93471 0.86914 1.42356 1.63014 1.14874 1.22433 1.20418 1.06234 0.95035 1.00641 0.92016 0.86009 0.85834 0.86856 0.87192 0.87527 0.78224 0.77921 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.69 55.43 0.76 -26.44 15 2 C 0.03 0.91 5.43 -17.82 -0.10 0.82 15 3 Si 1.04 24.51 26.54 -169.99 -4.51 20.00 15 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 15 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 6 H -0.27 -5.85 5.55 56.52 0.31 -5.54 15 7 C -0.62 -17.41 8.95 -34.44 -0.31 -17.72 15 8 H 0.06 1.81 7.99 -52.49 -0.42 1.39 15 9 C 0.21 5.07 2.48 -70.02 -0.17 4.90 15 10 H 0.04 1.00 6.67 -51.93 -0.35 0.65 15 11 N -0.86 -19.21 8.94 -6.65 -0.06 -19.27 15 12 C 0.03 0.62 4.89 -104.65 -0.51 0.11 15 13 C -0.16 -3.32 9.30 -39.55 -0.37 -3.68 15 14 C -0.08 -1.45 10.04 -39.62 -0.40 -1.85 15 15 C -0.22 -3.77 9.90 -39.38 -0.39 -4.16 15 16 C 0.21 3.60 6.75 -83.79 -0.57 3.04 15 17 N -0.89 -11.61 9.09 32.41 0.29 -11.31 15 18 C -0.20 -4.06 9.52 -39.38 -0.37 -4.44 15 19 H 0.27 8.19 8.73 -40.82 -0.36 7.83 15 20 H 0.33 7.18 7.54 -39.29 -0.30 6.88 15 21 H 0.33 7.29 5.70 -39.29 -0.22 7.07 15 22 H 0.11 2.30 6.79 -52.49 -0.36 1.95 15 23 H 0.11 1.64 8.06 -52.49 -0.42 1.21 15 24 H 0.11 1.50 8.06 -52.48 -0.42 1.08 15 25 H 0.39 4.10 8.84 -40.82 -0.36 3.74 15 26 H 0.39 4.55 8.84 -40.82 -0.36 4.18 15 27 H 0.11 2.18 8.03 -52.48 -0.42 1.76 15 LS Contribution 230.53 15.07 3.47 3.47 Total: -1.00 -30.58 230.53 -6.10 -36.68 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -2.87 Total: 19.85 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -3.19 Total: -22.98 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.99 Total: -57.02 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -4.51 Total: 20.00 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.58 -6.10 -36.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104579037.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.102 kcal (2) G-P(sol) polarization free energy of solvation -30.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds