Wall clock time and date at job start Mon Mar 30 2020 02:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99848 * 2 1 4 4 H 1.48500 * 109.47051 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47248 * 119.99920 * 3 2 1 6 6 H 1.48493 * 109.47198 * 239.99875 * 3 2 1 7 7 C 1.37878 * 120.00057 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00142 * 343.62660 * 7 2 1 9 9 C 1.50695 * 119.99712 * 163.61813 * 7 2 1 10 10 H 1.09002 * 109.47236 * 54.41093 * 9 7 2 11 11 N 1.46899 * 109.47592 * 294.40858 * 9 7 2 12 12 C 1.50703 * 109.47271 * 174.40416 * 9 7 2 13 13 C 1.38308 * 119.96085 * 80.00054 * 12 9 7 14 14 C 1.38260 * 120.15316 * 180.02562 * 13 12 9 15 15 C 1.38123 * 120.07116 * 359.97438 * 14 13 12 16 16 C 1.38891 * 119.92774 * 359.97438 * 15 14 13 17 17 N 1.39674 * 120.07493 * 180.02562 * 16 15 14 18 18 C 1.38079 * 119.96614 * 259.73111 * 12 9 7 19 19 H 0.97003 * 119.99899 * 174.63558 * 1 2 3 20 20 H 1.00904 * 110.99817 * 305.80564 * 11 9 7 21 21 H 1.00900 * 111.00320 * 69.75583 * 11 9 7 22 22 H 1.08002 * 119.92206 * 0.02562 * 13 12 9 23 23 H 1.08000 * 119.96482 * 180.02562 * 14 13 12 24 24 H 1.08008 * 120.03726 * 180.02562 * 15 14 13 25 25 H 0.96991 * 120.00174 * 0.02562 * 17 16 15 26 26 H 0.97004 * 119.99990 * 179.97438 * 17 16 15 27 27 H 1.08004 * 120.03556 * 359.97438 * 18 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6965 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 1.4974 -2.1102 0.2646 9 6 3.4656 -1.2206 -0.3675 10 1 4.0115 -0.5168 0.2608 11 7 3.6223 -0.8412 -1.7780 12 6 4.0115 -2.6095 -0.1573 13 6 3.7895 -3.5900 -1.1072 14 6 4.2880 -4.8657 -0.9181 15 6 5.0102 -5.1648 0.2206 16 6 5.2359 -4.1823 1.1760 17 7 5.9663 -4.4812 2.3285 18 6 4.7374 -2.9003 0.9807 19 1 -0.4850 -0.8364 -0.0785 20 1 3.0501 -1.4204 -2.3740 21 1 3.4130 0.1363 -1.9149 22 1 3.2255 -3.3586 -1.9987 23 1 4.1132 -5.6289 -1.6620 24 1 5.3998 -6.1614 0.3676 25 1 6.3168 -5.3757 2.4621 26 1 6.1236 -3.7941 2.9949 27 1 4.9144 -2.1329 1.7198 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104579037.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:02 Heat of formation + Delta-G solvation = -6.311259 kcal Electronic energy + Delta-G solvation = -11549.610336 eV Core-core repulsion = 9498.495788 eV Total energy + Delta-G solvation = -2051.114548 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.26582 -37.05047 -34.96454 -33.75396 -31.38487 -29.15682 -27.74761 -24.41217 -23.10587 -21.24689 -19.80083 -17.92216 -17.61222 -16.58822 -16.46932 -15.61636 -15.20942 -14.81830 -14.41442 -14.31815 -13.82798 -13.66740 -13.14418 -12.39509 -12.11861 -11.97361 -11.60029 -11.37612 -11.22121 -10.68074 -9.67323 -9.44521 -8.68502 -8.28470 -6.48822 0.68883 0.87614 1.41010 1.47912 1.69126 2.41346 2.96605 3.10240 3.13960 4.03332 4.15945 4.32522 4.51073 4.71038 4.75532 4.86426 5.17817 5.28834 5.49990 5.70758 5.75970 5.93474 6.06099 6.16408 6.39838 6.55829 6.70243 6.82394 7.11290 7.30934 8.53176 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.049790 B = 0.010958 C = 0.010378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.221417 B = 2554.683467 C = 2697.488964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.015 4.015 3 Si 1.086 2.914 4 H -0.286 1.286 5 H -0.268 1.268 6 H -0.239 1.239 7 C -0.623 4.623 8 H 0.013 0.987 9 C 0.214 3.786 10 H 0.039 0.961 11 N -0.843 5.843 12 C -0.007 4.007 13 C -0.188 4.188 14 C -0.077 4.077 15 C -0.220 4.220 16 C 0.213 3.787 17 N -0.868 5.868 18 C -0.224 4.224 19 H 0.253 0.747 20 H 0.331 0.669 21 H 0.329 0.671 22 H 0.104 0.896 23 H 0.141 0.859 24 H 0.144 0.856 25 H 0.408 0.592 26 H 0.403 0.597 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.952 -6.788 1.180 13.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.215 4.215 3 Si 0.906 3.094 4 H -0.212 1.212 5 H -0.193 1.193 6 H -0.164 1.164 7 C -0.662 4.662 8 H 0.031 0.969 9 C 0.104 3.896 10 H 0.057 0.943 11 N -0.374 5.374 12 C -0.008 4.008 13 C -0.208 4.208 14 C -0.095 4.095 15 C -0.242 4.242 16 C 0.108 3.892 17 N -0.409 5.409 18 C -0.248 4.248 19 H 0.062 0.938 20 H 0.142 0.858 21 H 0.143 0.857 22 H 0.122 0.878 23 H 0.159 0.841 24 H 0.162 0.838 25 H 0.238 0.762 26 H 0.231 0.769 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.511 -5.364 1.324 13.677 hybrid contribution -1.447 -1.577 0.452 2.187 sum 11.065 -6.941 1.776 13.182 Atomic orbital electron populations 1.70950 1.08289 1.29665 1.47582 1.27300 0.96122 1.06197 0.91857 0.83510 0.74761 0.71648 0.79435 1.21245 1.19323 1.16386 1.22739 0.96572 0.94923 1.51985 0.96865 1.18167 0.92550 0.91054 0.87846 0.94336 1.59688 1.62255 1.08256 1.07194 1.19810 0.91986 0.95797 0.93191 1.20734 1.05541 0.94099 1.00428 1.21108 0.95459 0.95683 0.97260 1.20733 1.08000 0.99478 0.96023 1.17769 0.90828 0.92488 0.88123 1.42297 1.61441 1.16160 1.21048 1.20509 1.07293 0.96679 1.00285 0.93793 0.85759 0.85709 0.87785 0.84101 0.83821 0.76245 0.76861 0.86979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.02 13.69 21.45 0.29 -57.73 15 2 C -0.02 -0.88 5.43 84.66 0.46 -0.42 15 3 Si 1.09 48.97 26.54 68.60 1.82 50.79 15 4 H -0.29 -13.03 7.11 99.48 0.71 -12.32 15 5 H -0.27 -11.44 7.11 99.48 0.71 -10.73 15 6 H -0.24 -9.39 5.55 99.48 0.55 -8.83 15 7 C -0.62 -35.88 8.95 25.60 0.23 -35.65 15 8 H 0.01 0.85 7.99 -2.91 -0.02 0.82 15 9 C 0.21 10.44 2.48 43.42 0.11 10.55 15 10 H 0.04 1.88 6.67 -2.39 -0.02 1.87 15 11 N -0.84 -37.39 8.94 -174.96 -1.56 -38.95 15 12 C -0.01 -0.29 4.89 -19.88 -0.10 -0.39 15 13 C -0.19 -7.70 9.30 22.29 0.21 -7.49 15 14 C -0.08 -2.55 10.04 22.25 0.22 -2.33 15 15 C -0.22 -6.65 9.90 22.40 0.22 -6.43 15 16 C 0.21 6.88 6.75 38.21 0.26 7.13 15 17 N -0.87 -19.72 9.09 -51.37 -0.47 -20.19 15 18 C -0.22 -8.92 9.52 22.40 0.21 -8.71 15 19 H 0.25 16.16 8.73 -92.71 -0.81 15.35 15 20 H 0.33 14.51 7.54 -89.69 -0.68 13.84 15 21 H 0.33 14.14 5.70 -89.69 -0.51 13.63 15 22 H 0.10 4.31 6.79 -2.91 -0.02 4.29 15 23 H 0.14 3.73 8.06 -2.91 -0.02 3.70 15 24 H 0.14 3.28 8.06 -2.91 -0.02 3.25 15 25 H 0.41 6.80 8.84 -92.71 -0.82 5.98 15 26 H 0.40 8.06 8.84 -92.71 -0.82 7.24 15 27 H 0.11 4.30 8.03 -2.91 -0.02 4.27 15 Total: -1.00 -67.57 230.53 0.11 -67.46 By element: Atomic # 1 Polarization: 44.15 SS G_CDS: -1.80 Total: 42.35 kcal Atomic # 6 Polarization: -45.56 SS G_CDS: 1.82 Total: -43.74 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -1.74 Total: -116.86 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 1.82 Total: 50.79 kcal Total: -67.57 0.11 -67.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104579037.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.148 kcal (2) G-P(sol) polarization free energy of solvation -67.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds