Wall clock time and date at job start Mon Mar 30 2020 01:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46874 * 2 1 4 4 N 1.46894 * 109.47154 * 239.99422 * 2 1 3 5 5 C 1.50704 * 109.47007 * 119.99070 * 2 1 3 6 6 C 1.37641 * 120.12219 * 100.00514 * 5 2 1 7 7 C 1.38616 * 120.24496 * 179.97438 * 6 5 2 8 8 C 1.38654 * 120.50060 * 0.02562 * 7 6 5 9 9 C 1.37595 * 120.25204 * 0.02562 * 8 7 6 10 10 C 1.40691 * 120.12939 * 279.72773 * 5 2 1 11 11 C 1.41399 * 120.24896 * 359.97438 * 10 5 2 12 12 H 1.08000 * 119.99189 * 333.95858 * 11 10 5 13 13 C 1.39943 * 120.00281 * 153.95328 * 11 10 5 14 14 N 1.30821 * 119.99988 * 343.27250 * 13 11 10 15 15 Si 1.86801 * 119.99880 * 163.27099 * 13 11 10 16 16 H 1.48494 * 109.46995 * 89.99864 * 15 13 11 17 17 H 1.48500 * 109.47007 * 210.00236 * 15 13 11 18 18 H 1.48498 * 109.47065 * 330.00100 * 15 13 11 19 19 H 1.08991 * 109.47075 * 60.00862 * 1 2 3 20 20 H 1.09004 * 109.47020 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47206 * 300.00157 * 1 2 3 22 22 H 1.00896 * 110.99986 * 296.03902 * 4 2 1 23 23 H 1.00894 * 110.99961 * 60.00107 * 4 2 1 24 24 H 1.07994 * 119.87794 * 359.97438 * 6 5 2 25 25 H 1.07999 * 119.74694 * 179.97438 * 7 6 5 26 26 H 1.08003 * 119.87759 * 179.97438 * 8 7 6 27 27 H 1.07999 * 120.13034 * 179.97438 * 9 8 7 28 28 H 0.97003 * 120.00007 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0323 -0.7102 1.2306 6 6 2.4576 -2.0168 1.1489 7 6 2.9206 -2.6723 2.2791 8 6 2.9606 -2.0220 3.5030 9 6 2.5395 -0.7163 3.6084 10 6 2.0739 -0.0386 2.4661 11 6 1.6456 1.3057 2.5609 12 1 1.6866 1.9478 1.6934 13 6 1.1686 1.8040 3.7785 14 7 0.8091 0.9783 4.7273 15 14 1.0453 3.6482 4.0489 16 1 -0.2927 4.1238 3.6145 17 1 1.2343 3.9509 5.4904 18 1 2.0963 4.3360 3.2567 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 1.7504 -1.6649 -1.1906 23 1 1.6962 -0.2352 -2.0384 24 1 2.4304 -2.5331 0.2008 25 1 3.2519 -3.6976 2.2059 26 1 3.3228 -2.5425 4.3773 27 1 2.5711 -0.2118 4.5627 28 1 0.4781 1.3237 5.5712 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104580060.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:38 Heat of formation + Delta-G solvation = -9.063789 kcal Electronic energy + Delta-G solvation = -11701.431153 eV Core-core repulsion = 9715.623158 eV Total energy + Delta-G solvation = -1985.807996 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.81433 -36.40847 -35.44819 -31.75037 -30.59324 -29.14443 -27.11757 -23.99224 -22.67132 -20.75810 -19.13302 -17.68618 -16.66376 -16.14130 -15.54062 -15.21491 -14.50268 -14.31172 -14.24055 -13.64924 -13.35293 -13.02984 -12.78643 -12.59938 -12.46467 -12.22039 -12.03981 -11.28315 -11.02886 -10.92636 -9.57914 -9.21568 -9.09693 -8.57425 -6.26211 1.02081 1.17844 1.38883 1.49792 1.55793 2.22309 2.80356 3.72205 3.91289 4.23243 4.45922 4.57266 4.60532 4.70947 4.84221 5.01390 5.16685 5.32742 5.36852 5.40930 5.57509 5.80106 6.02938 6.15571 6.23178 6.39545 6.51235 6.72786 6.82796 7.01836 7.11795 8.39218 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.034485 B = 0.015482 C = 0.011516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.752855 B = 1808.164696 C = 2430.878846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.156 3.844 3 H 0.063 0.937 4 N -0.843 5.843 5 C -0.194 4.194 6 C -0.088 4.088 7 C -0.244 4.244 8 C -0.119 4.119 9 C -0.194 4.194 10 C 0.085 3.915 11 C -0.486 4.486 12 H 0.078 0.922 13 C 0.035 3.965 14 N -0.830 5.830 15 Si 0.973 3.027 16 H -0.262 1.262 17 H -0.270 1.270 18 H -0.260 1.260 19 H 0.068 0.932 20 H 0.046 0.954 21 H 0.043 0.957 22 H 0.341 0.659 23 H 0.346 0.654 24 H 0.120 0.880 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.097 0.903 28 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.027 0.133 -5.367 5.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.081 0.919 4 N -0.374 5.374 5 C -0.196 4.196 6 C -0.107 4.107 7 C -0.263 4.263 8 C -0.137 4.137 9 C -0.214 4.214 10 C 0.082 3.918 11 C -0.516 4.516 12 H 0.096 0.904 13 C -0.179 4.179 14 N -0.457 5.457 15 Si 0.795 3.205 16 H -0.187 1.187 17 H -0.195 1.195 18 H -0.184 1.184 19 H 0.087 0.913 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.155 0.845 23 H 0.160 0.840 24 H 0.138 0.862 25 H 0.132 0.868 26 H 0.122 0.878 27 H 0.115 0.885 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.401 0.310 -4.878 4.904 hybrid contribution -1.122 0.484 0.467 1.308 sum -1.524 0.794 -4.411 4.734 Atomic orbital electron populations 1.22370 0.97199 1.01097 1.01607 1.19725 0.91902 0.96292 0.87635 0.91920 1.58963 1.67638 1.06958 1.03839 1.19971 1.09596 0.95007 0.94997 1.20662 0.98346 0.94259 0.97396 1.20772 1.11990 1.00192 0.93324 1.20950 1.00449 0.95108 0.97237 1.21284 1.05338 0.95564 0.99167 1.17769 0.89235 0.93452 0.91331 1.19691 1.38782 0.96354 0.96766 0.90408 1.26679 0.92115 1.04304 0.94797 1.69894 1.31265 1.38585 1.05912 0.85336 0.79663 0.77200 0.78349 1.18685 1.19484 1.18364 0.91345 0.93475 0.93764 0.84466 0.84046 0.86188 0.86781 0.87772 0.88487 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.97 9.41 71.98 0.68 -5.30 15 2 C 0.16 6.20 3.07 44.17 0.14 6.34 15 3 H 0.06 2.69 6.72 -2.38 -0.02 2.68 15 4 N -0.84 -27.06 8.82 -171.80 -1.52 -28.57 15 5 C -0.19 -9.26 5.14 -19.40 -0.10 -9.36 15 6 C -0.09 -3.90 9.24 22.22 0.21 -3.70 15 7 C -0.24 -10.88 10.05 22.46 0.23 -10.65 15 8 C -0.12 -5.77 10.02 22.22 0.22 -5.54 15 9 C -0.19 -10.54 8.69 22.73 0.20 -10.35 15 10 C 0.08 4.57 5.56 -21.29 -0.12 4.46 15 11 C -0.49 -25.83 7.74 23.46 0.18 -25.65 15 12 H 0.08 3.98 6.47 -2.91 -0.02 3.96 15 13 C 0.04 1.77 5.15 85.26 0.44 2.21 15 14 N -0.83 -44.03 10.98 21.83 0.24 -43.79 15 15 Si 0.97 38.58 29.59 68.60 2.03 40.61 15 16 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 17 H -0.27 -10.32 7.11 99.48 0.71 -9.61 15 18 H -0.26 -10.14 7.11 99.48 0.71 -9.43 15 19 H 0.07 2.03 8.14 -2.39 -0.02 2.01 15 20 H 0.05 1.66 8.14 -2.38 -0.02 1.64 15 21 H 0.04 1.87 7.45 -2.39 -0.02 1.85 15 22 H 0.34 10.09 7.08 -89.70 -0.64 9.45 15 23 H 0.35 8.97 9.04 -89.70 -0.81 8.16 15 24 H 0.12 4.50 6.14 -2.91 -0.02 4.48 15 25 H 0.11 4.35 8.06 -2.91 -0.02 4.33 15 26 H 0.10 4.49 8.06 -2.91 -0.02 4.46 15 27 H 0.10 5.53 6.22 -2.91 -0.02 5.51 15 28 H 0.28 13.75 8.30 -92.71 -0.77 12.98 15 Total: -1.00 -58.61 234.60 2.55 -56.06 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -0.27 Total: 33.23 kcal Atomic # 6 Polarization: -59.60 SS G_CDS: 2.07 Total: -57.54 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -1.28 Total: -72.36 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -58.61 2.55 -56.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104580060.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.998 kcal (2) G-P(sol) polarization free energy of solvation -58.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds