Wall clock time and date at job start Mon Mar 30 2020 01:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46887 * 2 1 4 4 C 1.52992 * 109.47259 * 119.99848 * 2 1 3 5 5 C 1.50700 * 109.47257 * 294.99935 * 4 2 1 6 6 H 1.07999 * 119.99988 * 359.97438 * 5 4 2 7 7 C 1.37885 * 120.00047 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47088 * 89.99795 * 9 7 5 11 11 H 1.48495 * 109.47293 * 209.99997 * 9 7 5 12 12 H 1.48507 * 109.47015 * 329.99955 * 9 7 5 13 13 C 1.50699 * 109.46997 * 240.00046 * 2 1 3 14 14 C 1.38670 * 120.41949 * 119.99695 * 13 2 1 15 15 C 1.38630 * 118.42159 * 180.02562 * 14 13 2 16 16 C 1.38228 * 119.16315 * 0.02562 * 15 14 13 17 17 N 1.31854 * 120.75623 * 359.97438 * 16 15 14 18 18 C 1.31878 * 121.73078 * 359.70830 * 17 16 15 19 19 H 1.09000 * 109.46372 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.46411 * 299.99669 * 1 2 3 21 21 H 1.08998 * 109.47030 * 59.99803 * 1 2 3 22 22 H 1.09004 * 109.47330 * 174.99958 * 4 2 1 23 23 H 1.08997 * 109.47279 * 55.00444 * 4 2 1 24 24 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 25 25 H 1.08001 * 120.79216 * 359.97438 * 14 13 2 26 26 H 1.08005 * 120.41868 * 180.02562 * 15 14 13 27 27 H 1.07995 * 119.62287 * 179.97438 * 16 15 14 28 28 H 1.08007 * 119.62078 * 180.31191 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0808 0.9747 2.3756 7 6 1.9934 -0.4016 3.7283 8 7 2.6723 -1.5213 3.8514 9 14 1.4987 0.5628 5.2496 10 1 0.1718 0.0935 5.7234 11 1 2.5082 0.3535 6.3183 12 1 1.4227 2.0080 4.9166 13 6 2.0324 -0.7104 -1.2305 14 6 2.8300 -0.0449 -2.1490 15 6 3.2686 -0.7381 -3.2665 16 6 2.8984 -2.0601 -3.4273 17 7 2.1384 -2.6611 -2.5330 18 6 1.7081 -2.0347 -1.4552 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 3.1264 -0.7994 1.2055 23 1 1.6055 -1.7197 1.2951 24 1 2.9202 -1.8437 4.7320 25 1 3.1025 0.9892 -1.9978 26 1 3.8917 -0.2513 -4.0023 27 1 3.2355 -2.6071 -4.2953 28 1 1.0912 -2.5615 -0.7421 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107547418.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:00 Heat of formation + Delta-G solvation = 11.355560 kcal Electronic energy + Delta-G solvation = -11307.858953 eV Core-core repulsion = 9322.936407 eV Total energy + Delta-G solvation = -1984.922546 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.81580 -35.45198 -32.52059 -31.73857 -29.53331 -26.92345 -24.19680 -23.22651 -22.34474 -19.40331 -16.84336 -16.37539 -15.69416 -14.71047 -14.34444 -13.58500 -13.36910 -13.04996 -12.67512 -12.34950 -12.06470 -11.59563 -11.01530 -10.90896 -10.69250 -10.40236 -10.01349 -9.60660 -9.28673 -9.20708 -8.90646 -8.39453 -8.33845 -6.01744 -4.04407 1.53151 1.68477 3.30612 3.37340 3.39846 4.22309 4.44177 4.82421 5.14171 5.32828 5.34110 5.39575 5.51697 5.80469 5.98199 6.12136 6.20374 6.36352 6.45160 6.60218 6.84631 6.94104 7.05418 7.15968 7.62986 7.74892 7.96512 8.34827 8.38735 9.01428 9.59482 11.09419 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.066021 B = 0.008615 C = 0.008346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.005423 B = 3249.372245 C = 3354.282144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.051 4.051 3 H 0.067 0.933 4 C 0.033 3.967 5 C -0.518 4.518 6 H 0.058 0.942 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 C -0.101 4.101 14 C -0.085 4.085 15 C -0.176 4.176 16 C 0.073 3.927 17 N -0.488 5.488 18 C 0.102 3.898 19 H 0.049 0.951 20 H 0.068 0.932 21 H 0.032 0.968 22 H 0.015 0.985 23 H 0.020 0.980 24 H 0.261 0.739 25 H 0.129 0.871 26 H 0.127 0.873 27 H 0.147 0.853 28 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 2.414 -10.630 10.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.071 4.071 3 H 0.086 0.914 4 C -0.004 4.004 5 C -0.557 4.557 6 H 0.076 0.924 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.103 4.103 14 C -0.111 4.111 15 C -0.196 4.196 16 C -0.084 4.084 17 N -0.196 5.196 18 C -0.054 4.054 19 H 0.068 0.932 20 H 0.087 0.913 21 H 0.052 0.948 22 H 0.034 0.966 23 H 0.039 0.961 24 H 0.070 0.930 25 H 0.147 0.853 26 H 0.145 0.855 27 H 0.164 0.836 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.960 1.414 -10.635 10.771 hybrid contribution 0.169 1.362 1.039 1.722 sum -0.791 2.777 -9.596 10.021 Atomic orbital electron populations 1.21731 0.94988 1.01329 1.00619 1.20359 0.95533 0.98902 0.92262 0.91445 1.19163 0.96281 0.95496 0.89497 1.21206 1.35109 1.08473 0.90866 0.92428 1.25018 0.95182 0.95064 0.99120 1.69971 1.38841 1.20978 1.23534 0.86611 0.78270 0.80373 0.82862 1.20650 1.21277 1.19883 1.21350 0.96324 0.95676 0.96966 1.21546 0.95999 1.00218 0.93338 1.22039 1.02143 0.96365 0.99036 1.22584 0.95514 0.92445 0.97884 1.67649 1.10308 1.38844 1.02807 1.22690 0.97169 0.91809 0.93768 0.93233 0.91274 0.94847 0.96618 0.96136 0.92964 0.85282 0.85530 0.83577 0.82746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.82 37.16 0.33 -2.04 15 2 C -0.05 -1.03 2.53 -91.77 -0.23 -1.26 15 3 H 0.07 1.33 7.93 -51.93 -0.41 0.92 15 4 C 0.03 0.82 4.19 -27.89 -0.12 0.70 15 5 C -0.52 -14.15 8.41 -34.44 -0.29 -14.44 15 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 15 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 8 N -0.89 -26.66 13.29 55.43 0.74 -25.92 15 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 15 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 15 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 15 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 13 C -0.10 -1.85 4.79 -104.48 -0.50 -2.35 15 14 C -0.09 -1.34 9.81 -39.28 -0.39 -1.73 15 15 C -0.18 -2.44 10.11 -39.44 -0.40 -2.84 15 16 C 0.07 1.08 11.18 -17.55 -0.20 0.88 15 17 N -0.49 -8.67 10.36 -13.25 -0.14 -8.81 15 18 C 0.10 1.90 9.95 -17.55 -0.17 1.72 15 19 H 0.05 0.88 7.43 -51.93 -0.39 0.50 15 20 H 0.07 1.32 6.95 -51.93 -0.36 0.96 15 21 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 22 H 0.02 0.43 8.14 -51.93 -0.42 0.00 15 23 H 0.02 0.54 7.58 -51.93 -0.39 0.15 15 24 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 25 H 0.13 1.78 8.00 -52.49 -0.42 1.36 15 26 H 0.13 1.33 8.06 -52.48 -0.42 0.91 15 27 H 0.15 1.68 8.06 -52.49 -0.42 1.25 15 28 H 0.16 2.84 7.19 -52.48 -0.38 2.46 15 LS Contribution 242.60 15.07 3.66 3.66 Total: -1.00 -30.13 242.60 -6.37 -36.50 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -3.55 Total: -1.90 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -2.06 Total: -19.84 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.60 Total: -34.73 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -30.13 -6.37 -36.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107547418.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.855 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds