Wall clock time and date at job start Mon Mar 30 2020 01:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.46887 * 2 1 4 4 C 1.52992 * 109.47259 * 119.99848 * 2 1 3 5 5 C 1.50700 * 109.47257 * 294.99935 * 4 2 1 6 6 H 1.07999 * 119.99988 * 359.97438 * 5 4 2 7 7 C 1.37885 * 120.00047 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 4 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47088 * 89.99795 * 9 7 5 11 11 H 1.48495 * 109.47293 * 209.99997 * 9 7 5 12 12 H 1.48507 * 109.47015 * 329.99955 * 9 7 5 13 13 C 1.50699 * 109.46997 * 240.00046 * 2 1 3 14 14 C 1.38670 * 120.41949 * 119.99695 * 13 2 1 15 15 C 1.38630 * 118.42159 * 180.02562 * 14 13 2 16 16 C 1.38228 * 119.16315 * 0.02562 * 15 14 13 17 17 N 1.31854 * 120.75623 * 359.97438 * 16 15 14 18 18 C 1.31878 * 121.73078 * 359.70830 * 17 16 15 19 19 H 1.09000 * 109.46372 * 180.02562 * 1 2 3 20 20 H 1.08999 * 109.46411 * 299.99669 * 1 2 3 21 21 H 1.08998 * 109.47030 * 59.99803 * 1 2 3 22 22 H 1.09004 * 109.47330 * 174.99958 * 4 2 1 23 23 H 1.08997 * 109.47279 * 55.00444 * 4 2 1 24 24 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 25 25 H 1.08001 * 120.79216 * 359.97438 * 14 13 2 26 26 H 1.08005 * 120.41868 * 180.02562 * 15 14 13 27 27 H 1.07995 * 119.62287 * 179.97438 * 16 15 14 28 28 H 1.08007 * 119.62078 * 180.31191 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0808 0.9747 2.3756 7 6 1.9934 -0.4016 3.7283 8 7 2.6723 -1.5213 3.8514 9 14 1.4987 0.5628 5.2496 10 1 0.1718 0.0935 5.7234 11 1 2.5082 0.3535 6.3183 12 1 1.4227 2.0080 4.9166 13 6 2.0324 -0.7104 -1.2305 14 6 2.8300 -0.0449 -2.1490 15 6 3.2686 -0.7381 -3.2665 16 6 2.8984 -2.0601 -3.4273 17 7 2.1384 -2.6611 -2.5330 18 6 1.7081 -2.0347 -1.4552 19 1 -0.3632 -1.0277 0.0005 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 3.1264 -0.7994 1.2055 23 1 1.6055 -1.7197 1.2951 24 1 2.9202 -1.8437 4.7320 25 1 3.1025 0.9892 -1.9978 26 1 3.8917 -0.2513 -4.0023 27 1 3.2355 -2.6071 -4.2953 28 1 1.0912 -2.5615 -0.7421 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107547418.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:59 Heat of formation + Delta-G solvation = -6.695854 kcal Electronic energy + Delta-G solvation = -11308.641721 eV Core-core repulsion = 9322.936407 eV Total energy + Delta-G solvation = -1985.705314 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.10804 -37.10158 -34.50154 -33.03348 -31.01436 -28.79072 -25.89065 -24.58134 -23.91705 -20.98423 -18.60961 -17.87472 -17.12319 -16.52369 -15.83456 -14.97697 -14.86555 -14.64686 -14.19851 -13.89378 -13.64262 -13.24295 -12.83320 -12.74885 -12.35818 -12.14513 -11.80454 -11.30792 -11.12837 -10.60123 -10.54693 -10.28473 -9.73481 -8.17527 -6.27873 0.27856 0.43006 1.41729 1.42503 1.53386 2.42380 2.95389 3.16205 3.60556 3.96799 4.00155 4.18527 4.22527 4.47915 4.58436 4.65773 4.80010 5.01020 5.12852 5.23337 5.27043 5.38193 5.45822 5.51696 5.78799 5.84891 5.89610 6.25519 6.88164 7.09709 7.41073 8.94439 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.066021 B = 0.008615 C = 0.008346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.005423 B = 3249.372245 C = 3354.282144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.041 4.041 3 H 0.072 0.928 4 C 0.041 3.959 5 C -0.530 4.530 6 H 0.067 0.933 7 C -0.002 4.002 8 N -0.937 5.937 9 Si 0.963 3.037 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.260 1.260 13 C -0.123 4.123 14 C -0.088 4.088 15 C -0.161 4.161 16 C 0.071 3.929 17 N -0.511 5.511 18 C 0.082 3.918 19 H 0.044 0.956 20 H 0.057 0.943 21 H 0.061 0.939 22 H -0.019 1.019 23 H -0.007 1.007 24 H 0.262 0.738 25 H 0.151 0.849 26 H 0.172 0.828 27 H 0.184 0.816 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.682 3.960 -12.014 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.060 4.060 3 H 0.091 0.909 4 C 0.004 3.996 5 C -0.568 4.568 6 H 0.085 0.915 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.184 1.184 13 C -0.125 4.125 14 C -0.114 4.114 15 C -0.181 4.181 16 C -0.086 4.086 17 N -0.220 5.220 18 C -0.074 4.074 19 H 0.063 0.937 20 H 0.076 0.924 21 H 0.080 0.920 22 H -0.001 1.001 23 H 0.012 0.988 24 H 0.070 0.930 25 H 0.169 0.831 26 H 0.189 0.811 27 H 0.201 0.799 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.855 2.971 -12.024 12.415 hybrid contribution 0.195 0.844 1.346 1.600 sum -0.660 3.816 -10.679 11.359 Atomic orbital electron populations 1.21656 0.93767 1.01291 1.01359 1.20119 0.96599 0.98432 0.90866 0.90925 1.18989 0.93902 0.94723 0.92011 1.21650 1.34614 1.08778 0.91780 0.91469 1.25969 0.95151 0.96035 1.02742 1.70121 1.40385 1.22901 1.24322 0.85481 0.77914 0.79385 0.78490 1.19905 1.21195 1.18435 1.21179 0.98276 0.95754 0.97257 1.21880 0.94903 1.01355 0.93283 1.22486 1.01053 0.95779 0.98746 1.23309 0.93990 0.93364 0.97951 1.67641 1.11555 1.39626 1.03209 1.22518 0.98259 0.92207 0.94438 0.93732 0.92439 0.92000 1.00070 0.98834 0.92955 0.83141 0.81099 0.79907 0.84437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.49 8.82 71.98 0.64 -3.85 15 2 C -0.04 -1.65 2.53 -11.54 -0.03 -1.68 15 3 H 0.07 2.81 7.93 -2.38 -0.02 2.79 15 4 C 0.04 2.13 4.19 29.85 0.13 2.26 15 5 C -0.53 -29.42 8.41 25.60 0.22 -29.20 15 6 H 0.07 3.52 7.06 -2.91 -0.02 3.50 15 7 C 0.00 -0.09 5.46 84.66 0.46 0.37 15 8 N -0.94 -57.46 13.29 21.45 0.28 -57.18 15 9 Si 0.96 43.96 29.54 68.60 2.03 45.98 15 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 15 11 H -0.29 -12.94 7.11 99.48 0.71 -12.24 15 12 H -0.26 -11.22 7.11 99.48 0.71 -10.51 15 13 C -0.12 -4.45 4.79 -19.77 -0.09 -4.54 15 14 C -0.09 -2.58 9.81 22.47 0.22 -2.35 15 15 C -0.16 -3.86 10.11 22.36 0.23 -3.63 15 16 C 0.07 1.90 11.18 84.69 0.95 2.84 15 17 N -0.51 -17.83 10.36 -195.85 -2.03 -19.86 15 18 C 0.08 3.08 9.95 84.67 0.84 3.93 15 19 H 0.04 1.62 7.43 -2.39 -0.02 1.61 15 20 H 0.06 2.18 6.95 -2.39 -0.02 2.17 15 21 H 0.06 1.88 8.14 -2.39 -0.02 1.86 15 22 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 15 23 H -0.01 -0.38 7.58 -2.39 -0.02 -0.40 15 24 H 0.26 15.14 8.31 -92.71 -0.77 14.37 15 25 H 0.15 3.67 8.00 -2.91 -0.02 3.64 15 26 H 0.17 2.59 8.06 -2.91 -0.02 2.56 15 27 H 0.18 3.42 8.06 -2.91 -0.02 3.40 15 28 H 0.14 5.44 7.19 -2.91 -0.02 5.42 15 Total: -1.00 -66.27 242.60 4.96 -61.30 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 1.13 Total: 5.63 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 3.55 Total: -35.88 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -1.74 Total: -77.04 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -66.27 4.96 -61.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107547418.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.609 kcal (2) G-P(sol) polarization free energy of solvation -66.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds