Wall clock time and date at job start Mon Mar 30 2020 01:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46965 * 2 1 4 4 C 1.53004 * 109.46993 * 240.00824 * 2 1 3 5 5 C 1.50703 * 109.47366 * 64.99456 * 4 2 1 6 6 H 1.08002 * 119.99504 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00275 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00065 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99773 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47060 * 89.99731 * 9 7 5 11 11 H 1.48494 * 109.47318 * 209.99823 * 9 7 5 12 12 H 1.48508 * 109.47117 * 329.99793 * 9 7 5 13 13 C 1.50690 * 109.47633 * 120.00533 * 2 1 3 14 14 C 1.38682 * 120.41929 * 239.72354 * 13 2 1 15 15 C 1.38625 * 118.41677 * 180.27483 * 14 13 2 16 16 C 1.38221 * 119.16809 * 0.02562 * 15 14 13 17 17 N 1.31860 * 120.76138 * 359.97438 * 16 15 14 18 18 C 1.31881 * 121.72574 * 359.97438 * 17 16 15 19 19 H 1.08998 * 109.47629 * 59.98907 * 1 2 3 20 20 H 1.09003 * 109.46965 * 180.02562 * 1 2 3 21 21 H 1.09012 * 109.46797 * 299.99398 * 1 2 3 22 22 H 1.08996 * 109.46945 * 184.99622 * 4 2 1 23 23 H 1.09004 * 109.46818 * 304.99675 * 4 2 1 24 24 H 0.97001 * 119.99684 * 179.97438 * 8 7 5 25 25 H 1.07993 * 120.78870 * 0.26805 * 14 13 2 26 26 H 1.08004 * 120.41613 * 179.97438 * 15 14 13 27 27 H 1.07994 * 119.62350 * 179.97438 * 16 15 14 28 28 H 1.08003 * 119.62232 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6412 0.0573 -2.4767 6 1 1.0804 0.9748 -2.3756 7 6 1.9921 -0.4018 -3.7285 8 7 1.6437 0.2772 -4.7995 9 14 2.9613 -1.9891 -3.9033 10 1 2.0213 -3.1328 -4.0199 11 1 3.8097 -1.9197 -5.1200 12 1 3.8235 -2.1768 -2.7087 13 6 2.0324 -0.7105 1.2303 14 6 2.8350 -0.0466 2.1459 15 6 3.2786 -0.7418 3.2602 16 6 2.9095 -2.0641 3.4203 17 7 2.1448 -2.6635 2.5288 18 6 1.7036 -2.0332 1.4577 19 1 -0.3634 0.5140 -0.8898 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8902 22 1 3.1262 -0.7993 -1.2058 23 1 1.6053 -1.7197 -1.2954 24 1 1.8909 -0.0457 -5.6801 25 1 3.1079 0.9872 1.9944 26 1 3.9055 -0.2564 3.9937 27 1 3.2513 -2.6128 4.2854 28 1 1.0787 -2.5571 0.7495 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107547420.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:01 Heat of formation + Delta-G solvation = 14.907017 kcal Electronic energy + Delta-G solvation = -11360.435622 eV Core-core repulsion = 9375.667079 eV Total energy + Delta-G solvation = -1984.768543 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.93944 -35.59926 -32.50439 -31.85337 -29.77274 -27.46716 -24.18509 -23.30339 -22.13988 -19.38921 -17.11032 -16.63438 -15.91598 -14.65386 -14.27028 -13.74755 -13.36302 -13.27006 -12.78164 -12.66941 -12.05522 -11.87433 -11.12534 -11.06357 -10.81558 -10.11184 -9.88825 -9.77512 -9.46253 -9.26829 -9.01447 -8.55932 -8.50850 -6.06576 -4.04612 1.40968 1.56938 3.30040 3.37944 3.42364 4.10449 4.43799 4.70464 5.04559 5.20647 5.27181 5.28751 5.39481 5.69536 5.87680 6.01875 6.08319 6.27821 6.34894 6.47826 6.72384 6.78349 6.97386 7.02407 7.20576 7.36109 7.75185 8.23838 8.50152 8.97555 9.55985 11.06486 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.049763 B = 0.010236 C = 0.009389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.533747 B = 2734.723260 C = 2981.566410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.041 4.041 3 H 0.073 0.927 4 C -0.004 4.004 5 C -0.517 4.517 6 H 0.075 0.925 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.875 3.125 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.266 1.266 13 C -0.106 4.106 14 C -0.082 4.082 15 C -0.174 4.174 16 C 0.074 3.926 17 N -0.488 5.488 18 C 0.099 3.901 19 H 0.074 0.926 20 H 0.048 0.952 21 H 0.035 0.965 22 H 0.016 0.984 23 H 0.015 0.985 24 H 0.263 0.737 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.148 0.852 28 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.822 -2.032 13.325 13.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.060 4.060 3 H 0.092 0.908 4 C -0.041 4.041 5 C -0.555 4.555 6 H 0.093 0.907 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.703 3.297 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.191 1.191 13 C -0.108 4.108 14 C -0.108 4.108 15 C -0.194 4.194 16 C -0.083 4.083 17 N -0.196 5.196 18 C -0.058 4.058 19 H 0.093 0.907 20 H 0.067 0.933 21 H 0.054 0.946 22 H 0.034 0.966 23 H 0.033 0.967 24 H 0.073 0.927 25 H 0.149 0.851 26 H 0.146 0.854 27 H 0.165 0.835 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 1.604 -2.914 13.260 13.671 hybrid contribution 0.858 0.093 -0.376 0.942 sum 2.462 -2.821 12.884 13.417 Atomic orbital electron populations 1.21746 0.94543 1.01386 1.01171 1.20148 0.95870 0.98968 0.91063 0.90812 1.19648 0.96094 0.95788 0.92592 1.21091 1.35736 1.09722 0.88978 0.90671 1.24990 0.95493 0.96894 0.95909 1.69903 1.46909 1.39270 0.98055 0.86847 0.80767 0.84373 0.77760 1.20178 1.21369 1.19075 1.21377 0.96502 0.95693 0.97217 1.21572 0.95713 1.00299 0.93264 1.22063 1.02024 0.96315 0.99032 1.22606 0.95376 0.92487 0.97800 1.67654 1.10193 1.38873 1.02885 1.22684 0.97268 0.91831 0.94008 0.90741 0.93305 0.94590 0.96619 0.96724 0.92715 0.85068 0.85383 0.83474 0.82825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 8.82 37.16 0.33 -2.02 15 2 C -0.04 -0.79 2.53 -91.78 -0.23 -1.03 15 3 H 0.07 1.41 7.93 -51.93 -0.41 1.00 15 4 C 0.00 -0.09 3.26 -27.88 -0.09 -0.18 15 5 C -0.52 -14.25 8.96 -34.44 -0.31 -14.56 15 6 H 0.08 2.20 7.30 -52.49 -0.38 1.82 15 7 C 0.07 1.96 5.47 -17.82 -0.10 1.87 15 8 N -0.90 -27.46 13.96 55.43 0.77 -26.68 15 9 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 15 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 15 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 12 H -0.27 -6.45 6.54 56.52 0.37 -6.08 15 13 C -0.11 -1.83 4.79 -104.48 -0.50 -2.33 15 14 C -0.08 -1.23 9.81 -39.27 -0.39 -1.61 15 15 C -0.17 -2.27 10.11 -39.44 -0.40 -2.67 15 16 C 0.07 1.03 11.18 -17.55 -0.20 0.84 15 17 N -0.49 -8.17 10.36 -13.25 -0.14 -8.31 15 18 C 0.10 1.71 9.95 -17.55 -0.17 1.54 15 19 H 0.07 1.46 6.95 -51.93 -0.36 1.10 15 20 H 0.05 0.83 7.41 -51.93 -0.38 0.45 15 21 H 0.03 0.56 8.14 -51.92 -0.42 0.14 15 22 H 0.02 0.38 7.20 -51.93 -0.37 0.00 15 23 H 0.01 0.34 7.03 -51.93 -0.36 -0.03 15 24 H 0.26 7.52 8.31 -40.82 -0.34 7.19 15 25 H 0.13 1.70 8.00 -52.49 -0.42 1.28 15 26 H 0.13 1.24 8.06 -52.48 -0.42 0.82 15 27 H 0.15 1.56 8.06 -52.49 -0.42 1.14 15 28 H 0.15 2.58 7.19 -52.48 -0.38 2.21 15 LS Contribution 239.00 15.07 3.60 3.60 Total: -1.00 -30.48 239.00 -6.00 -36.48 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -3.51 Total: -1.98 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -2.06 Total: -20.16 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.64 Total: -34.99 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -30.48 -6.00 -36.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107547420.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.389 kcal (2) G-P(sol) polarization free energy of solvation -30.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds