Wall clock time and date at job start Mon Mar 30 2020 01:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46935 * 2 1 4 4 C 1.52995 * 109.46949 * 120.00320 * 2 1 3 5 5 C 1.50702 * 109.47455 * 294.99689 * 4 2 1 6 6 H 1.08004 * 119.99857 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00533 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99892 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00397 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47036 * 89.99983 * 9 7 5 11 11 H 1.48492 * 109.47206 * 210.00099 * 9 7 5 12 12 H 1.48501 * 109.46762 * 330.00306 * 9 7 5 13 13 C 1.50703 * 109.46846 * 240.00132 * 2 1 3 14 14 C 1.38655 * 120.78758 * 119.99877 * 13 2 1 15 15 C 1.38197 * 119.15875 * 179.97438 * 14 13 2 16 16 N 1.31874 * 120.76735 * 359.97438 * 15 14 13 17 17 C 1.31868 * 121.72350 * 0.02562 * 16 15 14 18 18 C 1.38198 * 120.76515 * 0.02562 * 17 16 15 19 19 H 1.09005 * 109.46923 * 299.99601 * 1 2 3 20 20 H 1.08999 * 109.47302 * 59.99708 * 1 2 3 21 21 H 1.08999 * 109.47393 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47230 * 54.99910 * 4 2 1 23 23 H 1.09005 * 109.47027 * 174.99647 * 4 2 1 24 24 H 0.96996 * 120.00189 * 179.97438 * 8 7 5 25 25 H 1.07995 * 120.41666 * 359.96253 * 14 13 2 26 26 H 1.07994 * 119.61835 * 180.02562 * 15 14 13 27 27 H 1.07999 * 119.61410 * 179.97438 * 17 16 15 28 28 H 1.08005 * 120.41632 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0807 0.9745 2.3758 7 6 1.9932 -0.4018 3.7282 8 7 2.6764 -1.5190 3.8511 9 14 1.4997 0.5632 5.2496 10 1 0.1726 0.0952 5.7238 11 1 2.5094 0.3533 6.3180 12 1 1.4248 2.0084 4.9163 13 6 2.0323 -0.7104 -1.2305 14 6 2.8303 -0.0523 -2.1539 15 6 3.2727 -0.7364 -3.2702 16 7 2.9445 -1.9993 -3.4615 17 6 2.1876 -2.6565 -2.6047 18 6 1.7074 -2.0375 -1.4662 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.6053 -1.7199 1.2950 23 1 3.1263 -0.7996 1.2055 24 1 2.9242 -1.8416 4.7316 25 1 3.1026 0.9817 -2.0027 26 1 3.8950 -0.2312 -3.9940 27 1 1.9394 -3.6901 -2.7954 28 1 1.0883 -2.5812 -0.7680 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107548500.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:02 Heat of formation + Delta-G solvation = 10.607391 kcal Electronic energy + Delta-G solvation = -11299.154450 eV Core-core repulsion = 9314.199461 eV Total energy + Delta-G solvation = -1984.954989 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.79285 -35.62376 -32.59240 -30.84806 -30.23322 -26.97596 -24.32150 -23.13106 -22.36287 -19.46658 -16.73873 -15.82595 -15.70418 -15.13217 -14.52003 -13.60725 -13.48393 -12.98022 -12.92357 -12.41280 -11.76428 -11.38606 -11.15106 -10.92911 -10.71857 -10.45000 -9.97582 -9.73394 -9.20117 -9.01037 -8.78583 -8.73112 -8.39677 -6.04443 -4.07223 1.52346 1.73356 3.28800 3.35629 3.38263 4.22278 4.42002 4.77906 5.15440 5.26315 5.31437 5.54052 5.60212 5.86425 5.96971 6.09731 6.18086 6.24225 6.51775 6.58700 6.88246 6.90652 7.04897 7.14255 7.59740 7.71511 7.93696 8.31061 8.34516 8.98467 9.56859 11.06768 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.065880 B = 0.008564 C = 0.008300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.914130 B = 3268.837982 C = 3372.801615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 H 0.069 0.931 4 C 0.034 3.966 5 C -0.519 4.519 6 H 0.058 0.942 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.274 1.274 13 C -0.011 4.011 14 C -0.179 4.179 15 C 0.090 3.910 16 N -0.503 5.503 17 C 0.090 3.910 18 C -0.165 4.165 19 H 0.069 0.931 20 H 0.033 0.967 21 H 0.049 0.951 22 H 0.020 0.980 23 H 0.016 0.984 24 H 0.261 0.739 25 H 0.129 0.871 26 H 0.148 0.852 27 H 0.149 0.851 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.968 1.422 -9.319 9.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.076 4.076 3 H 0.088 0.912 4 C -0.003 4.003 5 C -0.557 4.557 6 H 0.076 0.924 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.198 1.198 13 C -0.019 4.019 14 C -0.199 4.199 15 C -0.067 4.067 16 N -0.213 5.213 17 C -0.066 4.066 18 C -0.184 4.184 19 H 0.088 0.912 20 H 0.052 0.948 21 H 0.068 0.932 22 H 0.038 0.962 23 H 0.034 0.966 24 H 0.071 0.929 25 H 0.147 0.853 26 H 0.165 0.835 27 H 0.167 0.833 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.583 0.872 -9.933 10.096 hybrid contribution -0.440 0.870 1.743 1.997 sum -2.023 1.742 -8.190 8.614 Atomic orbital electron populations 1.21712 0.94823 1.01335 1.00679 1.20461 0.95696 0.99071 0.92413 0.91249 1.19144 0.96288 0.95459 0.89387 1.21201 1.35169 1.08486 0.90854 0.92417 1.25014 0.95139 0.95077 0.99138 1.69967 1.38647 1.21169 1.23570 0.86603 0.78260 0.80400 0.82813 1.20649 1.21238 1.19849 1.20794 0.92207 0.93898 0.94982 1.22088 1.00430 1.01512 0.95861 1.22600 0.97451 0.90602 0.96057 1.67596 1.13280 1.09258 1.31126 1.22646 0.93721 0.99593 0.90619 1.22071 1.02086 0.95580 0.98706 0.91235 0.94797 0.93239 0.96159 0.96587 0.92944 0.85273 0.83475 0.83341 0.84808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.83 37.16 0.33 -2.00 15 2 C -0.06 -1.16 2.54 -91.77 -0.23 -1.39 15 3 H 0.07 1.37 7.95 -51.93 -0.41 0.96 15 4 C 0.03 0.86 4.20 -27.88 -0.12 0.74 15 5 C -0.52 -14.12 8.41 -34.44 -0.29 -14.41 15 6 H 0.06 1.51 7.06 -52.48 -0.37 1.14 15 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 8 N -0.89 -26.51 13.29 55.43 0.74 -25.77 15 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 15 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 13 C -0.01 -0.20 4.80 -104.32 -0.50 -0.70 15 14 C -0.18 -2.88 9.76 -39.44 -0.39 -3.26 15 15 C 0.09 1.36 11.18 -17.55 -0.20 1.16 15 16 N -0.50 -8.32 10.36 -13.26 -0.14 -8.45 15 17 C 0.09 1.43 11.18 -17.55 -0.20 1.23 15 18 C -0.16 -2.82 8.89 -39.45 -0.35 -3.17 15 19 H 0.07 1.33 6.95 -51.93 -0.36 0.97 15 20 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 21 H 0.05 0.87 7.48 -51.93 -0.39 0.48 15 22 H 0.02 0.53 7.67 -51.93 -0.40 0.13 15 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 15 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 25 H 0.13 1.81 8.01 -52.49 -0.42 1.39 15 26 H 0.15 1.75 8.06 -52.49 -0.42 1.32 15 27 H 0.15 1.90 8.06 -52.49 -0.42 1.47 15 28 H 0.13 2.23 7.35 -52.48 -0.39 1.85 15 LS Contribution 242.91 15.07 3.66 3.66 Total: -1.00 -30.01 242.91 -6.36 -36.37 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -3.56 Total: -1.75 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -2.04 Total: -20.28 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.60 Total: -34.23 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -30.01 -6.36 -36.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107548500.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.978 kcal (2) G-P(sol) polarization free energy of solvation -30.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds