Wall clock time and date at job start Mon Mar 30 2020 01:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46935 * 2 1 4 4 C 1.52995 * 109.46949 * 120.00320 * 2 1 3 5 5 C 1.50702 * 109.47455 * 294.99689 * 4 2 1 6 6 H 1.08004 * 119.99857 * 359.97438 * 5 4 2 7 7 C 1.37870 * 120.00533 * 180.02562 * 5 4 2 8 8 N 1.31521 * 119.99892 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00397 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47036 * 89.99983 * 9 7 5 11 11 H 1.48492 * 109.47206 * 210.00099 * 9 7 5 12 12 H 1.48501 * 109.46762 * 330.00306 * 9 7 5 13 13 C 1.50703 * 109.46846 * 240.00132 * 2 1 3 14 14 C 1.38655 * 120.78758 * 119.99877 * 13 2 1 15 15 C 1.38197 * 119.15875 * 179.97438 * 14 13 2 16 16 N 1.31874 * 120.76735 * 359.97438 * 15 14 13 17 17 C 1.31868 * 121.72350 * 0.02562 * 16 15 14 18 18 C 1.38198 * 120.76515 * 0.02562 * 17 16 15 19 19 H 1.09005 * 109.46923 * 299.99601 * 1 2 3 20 20 H 1.08999 * 109.47302 * 59.99708 * 1 2 3 21 21 H 1.08999 * 109.47393 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47230 * 54.99910 * 4 2 1 23 23 H 1.09005 * 109.47027 * 174.99647 * 4 2 1 24 24 H 0.96996 * 120.00189 * 179.97438 * 8 7 5 25 25 H 1.07995 * 120.41666 * 359.96253 * 14 13 2 26 26 H 1.07994 * 119.61835 * 180.02562 * 15 14 13 27 27 H 1.07999 * 119.61410 * 179.97438 * 17 16 15 28 28 H 1.08005 * 120.41632 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 1 1.0807 0.9745 2.3758 7 6 1.9932 -0.4018 3.7282 8 7 2.6764 -1.5190 3.8511 9 14 1.4997 0.5632 5.2496 10 1 0.1726 0.0952 5.7238 11 1 2.5094 0.3533 6.3180 12 1 1.4248 2.0084 4.9163 13 6 2.0323 -0.7104 -1.2305 14 6 2.8303 -0.0523 -2.1539 15 6 3.2727 -0.7364 -3.2702 16 7 2.9445 -1.9993 -3.4615 17 6 2.1876 -2.6565 -2.6047 18 6 1.7074 -2.0375 -1.4662 19 1 -0.3633 0.5138 0.8901 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.6053 -1.7199 1.2950 23 1 3.1263 -0.7996 1.2055 24 1 2.9242 -1.8416 4.7316 25 1 3.1026 0.9817 -2.0027 26 1 3.8950 -0.2312 -3.9940 27 1 1.9394 -3.6901 -2.7954 28 1 1.0883 -2.5812 -0.7680 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107548500.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:02 Heat of formation + Delta-G solvation = -6.950138 kcal Electronic energy + Delta-G solvation = -11299.915801 eV Core-core repulsion = 9314.199461 eV Total energy + Delta-G solvation = -1985.716341 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.08062 -37.24405 -34.58356 -32.11025 -31.74276 -28.85749 -25.99881 -24.50115 -23.93367 -21.02677 -18.65032 -17.34458 -17.08016 -16.52736 -16.30938 -15.01764 -14.89311 -14.64007 -14.30420 -14.19450 -13.52936 -12.96817 -12.78276 -12.64252 -12.45538 -12.24239 -11.74162 -11.40843 -11.16635 -10.56740 -10.33648 -10.24184 -10.00248 -8.18937 -6.29192 0.28708 0.40550 1.41327 1.41884 1.52820 2.41464 2.96296 3.15008 3.64564 3.83193 3.93199 4.30363 4.31505 4.41999 4.55930 4.63993 4.83060 4.96615 5.08515 5.16795 5.23593 5.40558 5.45763 5.52129 5.78967 5.84412 5.87179 6.23890 6.86515 7.07326 7.39850 8.92999 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.065880 B = 0.008564 C = 0.008300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.914130 B = 3268.837982 C = 3372.801615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.049 4.049 3 H 0.071 0.929 4 C 0.043 3.957 5 C -0.532 4.532 6 H 0.066 0.934 7 C 0.000 4.000 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.261 1.261 13 C -0.033 4.033 14 C -0.182 4.182 15 C 0.092 3.908 16 N -0.515 5.515 17 C 0.091 3.909 18 C -0.179 4.179 19 H 0.056 0.944 20 H 0.061 0.939 21 H 0.047 0.953 22 H -0.003 1.003 23 H -0.019 1.019 24 H 0.262 0.738 25 H 0.149 0.851 26 H 0.184 0.816 27 H 0.176 0.824 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.348 2.475 -10.135 10.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.067 4.067 3 H 0.090 0.910 4 C 0.006 3.994 5 C -0.570 4.570 6 H 0.084 0.916 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.185 1.185 13 C -0.041 4.041 14 C -0.201 4.201 15 C -0.064 4.064 16 N -0.225 5.225 17 C -0.065 4.065 18 C -0.198 4.198 19 H 0.075 0.925 20 H 0.080 0.920 21 H 0.066 0.934 22 H 0.015 0.985 23 H -0.001 1.001 24 H 0.071 0.929 25 H 0.167 0.833 26 H 0.201 0.799 27 H 0.193 0.807 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.974 1.935 -10.762 11.112 hybrid contribution -0.286 0.517 1.930 2.019 sum -2.260 2.452 -8.832 9.440 Atomic orbital electron populations 1.21640 0.93432 1.01511 1.01379 1.20235 0.96889 0.98539 0.91085 0.91033 1.18963 0.93904 0.94812 0.91760 1.21638 1.34720 1.08790 0.91803 0.91569 1.25945 0.95108 0.96037 1.02684 1.70109 1.40122 1.23019 1.24363 0.85492 0.77960 0.79370 0.78527 1.19816 1.21182 1.18548 1.20728 0.93800 0.94537 0.95037 1.22327 0.99620 1.02542 0.95635 1.23171 0.96844 0.90194 0.96180 1.67699 1.13492 1.09990 1.31320 1.23043 0.92931 1.00741 0.89776 1.22141 1.02733 0.95540 0.99436 0.92451 0.92030 0.93374 0.98500 1.00083 0.92912 0.83322 0.79930 0.80650 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 8.83 71.98 0.64 -3.71 15 2 C -0.05 -1.95 2.54 -11.54 -0.03 -1.98 15 3 H 0.07 2.78 7.95 -2.39 -0.02 2.76 15 4 C 0.04 2.20 4.20 29.85 0.13 2.33 15 5 C -0.53 -29.21 8.41 25.60 0.22 -28.99 15 6 H 0.07 3.44 7.06 -2.91 -0.02 3.42 15 7 C 0.00 -0.01 5.46 84.65 0.46 0.45 15 8 N -0.94 -56.66 13.29 21.45 0.28 -56.37 15 9 Si 0.96 43.55 29.54 68.60 2.03 45.58 15 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 11 H -0.29 -12.84 7.11 99.48 0.71 -12.13 15 12 H -0.26 -11.22 7.11 99.48 0.71 -10.52 15 13 C -0.03 -1.17 4.80 -19.67 -0.09 -1.27 15 14 C -0.18 -5.49 9.76 22.36 0.22 -5.27 15 15 C 0.09 2.56 11.18 84.68 0.95 3.51 15 16 N -0.52 -15.90 10.36 -195.86 -2.03 -17.92 15 17 C 0.09 2.74 11.18 84.68 0.95 3.69 15 18 C -0.18 -6.06 8.89 22.36 0.20 -5.86 15 19 H 0.06 2.14 6.95 -2.38 -0.02 2.13 15 20 H 0.06 1.83 8.14 -2.39 -0.02 1.81 15 21 H 0.05 1.69 7.48 -2.39 -0.02 1.67 15 22 H 0.00 -0.19 7.67 -2.39 -0.02 -0.20 15 23 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 15 24 H 0.26 14.97 8.31 -92.71 -0.77 14.20 15 25 H 0.15 3.81 8.01 -2.91 -0.02 3.79 15 26 H 0.18 3.64 8.06 -2.91 -0.02 3.61 15 27 H 0.18 4.15 8.06 -2.91 -0.02 4.13 15 28 H 0.13 4.39 7.35 -2.91 -0.02 4.37 15 Total: -1.00 -64.19 242.91 5.03 -59.16 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 1.13 Total: 6.67 kcal Atomic # 6 Polarization: -40.74 SS G_CDS: 3.63 Total: -37.11 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -1.74 Total: -74.30 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -64.19 5.03 -59.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107548500.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.210 kcal (2) G-P(sol) polarization free energy of solvation -64.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds