Wall clock time and date at job start Mon Mar 30 2020 01:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47101 * 2 1 4 4 C 1.52998 * 109.46813 * 240.00320 * 2 1 3 5 5 C 1.50706 * 109.47348 * 65.00232 * 4 2 1 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00436 * 179.72505 * 5 4 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46683 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47426 * 119.99743 * 9 7 5 12 12 H 1.48501 * 109.46833 * 239.99986 * 9 7 5 13 13 C 1.50695 * 109.47037 * 120.00502 * 2 1 3 14 14 C 1.38654 * 120.78823 * 59.71586 * 13 2 1 15 15 C 1.38212 * 119.16112 * 179.75533 * 14 13 2 16 16 N 1.31868 * 120.75891 * 0.53260 * 15 14 13 17 17 C 1.31859 * 121.73153 * 359.73860 * 16 15 14 18 18 C 1.38207 * 120.76240 * 359.97438 * 17 16 15 19 19 H 1.09005 * 109.46643 * 299.99881 * 1 2 3 20 20 H 1.09000 * 109.47034 * 59.98926 * 1 2 3 21 21 H 1.08991 * 109.47325 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47671 * 305.00441 * 4 2 1 23 23 H 1.08998 * 109.47454 * 185.00438 * 4 2 1 24 24 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 25 25 H 1.08003 * 120.41999 * 0.02562 * 14 13 2 26 26 H 1.08001 * 119.61488 * 180.25274 * 15 14 13 27 27 H 1.08000 * 119.62143 * 180.02562 * 17 16 15 28 28 H 1.08010 * 120.41767 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0800 0.9743 -2.3756 7 6 1.9976 -0.3987 -3.7281 8 7 2.6858 -1.5127 -3.8507 9 14 1.5041 0.5665 -5.2493 10 1 0.7414 1.7742 -4.8433 11 1 2.7226 0.9765 -5.9924 12 1 0.6552 -0.2844 -6.1216 13 6 2.0323 -0.7105 1.2304 14 6 1.7026 -2.0360 1.4688 15 6 2.1859 -2.6562 2.6055 16 7 2.9430 -1.9991 3.4622 17 6 3.2720 -0.7367 3.2706 18 6 2.8305 -0.0528 2.1536 19 1 -0.3633 0.5139 0.8901 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 1.6053 -1.7197 -1.2954 23 1 3.1263 -0.7995 -1.2057 24 1 2.9368 -1.8333 -4.7311 25 1 1.0795 -2.5782 0.7730 26 1 1.9370 -3.6897 2.7964 27 1 3.8944 -0.2314 3.9943 28 1 3.1031 0.9814 2.0024 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107548501.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:04 Heat of formation + Delta-G solvation = 10.580372 kcal Electronic energy + Delta-G solvation = -11299.050818 eV Core-core repulsion = 9314.094657 eV Total energy + Delta-G solvation = -1984.956161 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.79344 -35.62486 -32.59472 -30.84717 -30.23378 -26.97626 -24.32312 -23.13079 -22.36446 -19.46768 -16.73935 -15.82842 -15.70611 -15.13232 -14.51885 -13.60531 -13.48551 -12.98045 -12.92381 -12.41359 -11.77163 -11.38645 -11.14864 -10.95119 -10.69388 -10.44874 -9.97844 -9.73879 -9.19113 -9.00629 -8.78614 -8.73171 -8.40165 -6.04712 -4.07388 1.52267 1.73401 3.27857 3.35816 3.39088 4.22274 4.41915 4.77826 5.15383 5.26308 5.31312 5.53981 5.60139 5.86416 5.96949 6.09705 6.18044 6.24176 6.51752 6.58678 6.88314 6.90631 7.04929 7.14239 7.59928 7.71413 7.93606 8.31089 8.34424 8.98572 9.56772 11.06543 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.065865 B = 0.008562 C = 0.008299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.010663 B = 3269.459191 C = 3372.945041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.058 4.058 3 H 0.069 0.931 4 C 0.034 3.966 5 C -0.518 4.518 6 H 0.058 0.942 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.284 1.284 13 C -0.011 4.011 14 C -0.165 4.165 15 C 0.090 3.910 16 N -0.503 5.503 17 C 0.090 3.910 18 C -0.179 4.179 19 H 0.033 0.967 20 H 0.069 0.931 21 H 0.049 0.951 22 H 0.020 0.980 23 H 0.016 0.984 24 H 0.260 0.740 25 H 0.134 0.866 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.994 1.423 9.335 9.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.076 4.076 3 H 0.087 0.913 4 C -0.003 4.003 5 C -0.556 4.556 6 H 0.076 0.924 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.019 4.019 14 C -0.185 4.185 15 C -0.066 4.066 16 N -0.213 5.213 17 C -0.067 4.067 18 C -0.199 4.199 19 H 0.052 0.948 20 H 0.088 0.912 21 H 0.068 0.932 22 H 0.038 0.962 23 H 0.034 0.966 24 H 0.070 0.930 25 H 0.152 0.848 26 H 0.167 0.833 27 H 0.165 0.835 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.615 0.875 9.951 10.119 hybrid contribution -0.421 0.866 -1.747 1.995 sum -2.037 1.741 8.204 8.630 Atomic orbital electron populations 1.21713 0.94822 1.01336 1.00686 1.20459 0.95697 0.99066 0.92416 0.91250 1.19150 0.96302 0.95465 0.89404 1.21241 1.34992 1.08548 0.90852 0.92357 1.25016 0.95144 0.95081 0.99155 1.69977 1.38513 1.21383 1.23479 0.86549 0.78302 0.80098 0.83155 1.19698 1.21027 1.21013 1.20790 0.92205 0.93904 0.94972 1.22076 1.02054 0.95599 0.98723 1.22650 0.93715 0.99581 0.90629 1.67586 1.13305 1.09274 1.31100 1.22600 0.97438 0.90607 0.96055 1.22089 1.00451 1.01502 0.95858 0.94794 0.91232 0.93234 0.96163 0.96573 0.93000 0.84814 0.83339 0.83472 0.85273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.82 37.16 0.33 -2.00 15 2 C -0.06 -1.16 2.54 -91.77 -0.23 -1.39 15 3 H 0.07 1.37 7.95 -51.93 -0.41 0.96 15 4 C 0.03 0.85 4.20 -27.88 -0.12 0.73 15 5 C -0.52 -14.10 8.41 -34.44 -0.29 -14.39 15 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 15 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 8 N -0.89 -26.51 13.29 55.43 0.74 -25.78 15 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 15 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 15 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 13 C -0.01 -0.19 4.79 -104.32 -0.50 -0.69 15 14 C -0.16 -2.82 8.90 -39.44 -0.35 -3.17 15 15 C 0.09 1.43 11.18 -17.55 -0.20 1.23 15 16 N -0.50 -8.31 10.36 -13.25 -0.14 -8.45 15 17 C 0.09 1.36 11.18 -17.55 -0.20 1.17 15 18 C -0.18 -2.88 9.76 -39.44 -0.39 -3.26 15 19 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 20 H 0.07 1.33 6.95 -51.93 -0.36 0.97 15 21 H 0.05 0.87 7.46 -51.93 -0.39 0.49 15 22 H 0.02 0.53 7.68 -51.93 -0.40 0.13 15 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 15 25 H 0.13 2.23 7.35 -52.48 -0.39 1.84 15 26 H 0.15 1.90 8.06 -52.49 -0.42 1.47 15 27 H 0.15 1.75 8.06 -52.49 -0.42 1.32 15 28 H 0.13 1.81 8.01 -52.48 -0.42 1.39 15 LS Contribution 242.91 15.07 3.66 3.66 Total: -1.00 -30.04 242.91 -6.36 -36.40 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -3.56 Total: -1.78 kcal Atomic # 6 Polarization: -18.23 SS G_CDS: -2.04 Total: -20.27 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.60 Total: -34.23 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -30.04 -6.36 -36.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107548501.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.981 kcal (2) G-P(sol) polarization free energy of solvation -30.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds