Wall clock time and date at job start Mon Mar 30 2020 01:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47101 * 2 1 4 4 C 1.52998 * 109.46813 * 240.00320 * 2 1 3 5 5 C 1.50706 * 109.47348 * 65.00232 * 4 2 1 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00436 * 179.72505 * 5 4 2 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46683 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47426 * 119.99743 * 9 7 5 12 12 H 1.48501 * 109.46833 * 239.99986 * 9 7 5 13 13 C 1.50695 * 109.47037 * 120.00502 * 2 1 3 14 14 C 1.38654 * 120.78823 * 59.71586 * 13 2 1 15 15 C 1.38212 * 119.16112 * 179.75533 * 14 13 2 16 16 N 1.31868 * 120.75891 * 0.53260 * 15 14 13 17 17 C 1.31859 * 121.73153 * 359.73860 * 16 15 14 18 18 C 1.38207 * 120.76240 * 359.97438 * 17 16 15 19 19 H 1.09005 * 109.46643 * 299.99881 * 1 2 3 20 20 H 1.09000 * 109.47034 * 59.98926 * 1 2 3 21 21 H 1.08991 * 109.47325 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47671 * 305.00441 * 4 2 1 23 23 H 1.08998 * 109.47454 * 185.00438 * 4 2 1 24 24 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 25 25 H 1.08003 * 120.41999 * 0.02562 * 14 13 2 26 26 H 1.08001 * 119.61488 * 180.25274 * 15 14 13 27 27 H 1.08000 * 119.62143 * 180.02562 * 17 16 15 28 28 H 1.08010 * 120.41767 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4766 6 1 1.0800 0.9743 -2.3756 7 6 1.9976 -0.3987 -3.7281 8 7 2.6858 -1.5127 -3.8507 9 14 1.5041 0.5665 -5.2493 10 1 0.7414 1.7742 -4.8433 11 1 2.7226 0.9765 -5.9924 12 1 0.6552 -0.2844 -6.1216 13 6 2.0323 -0.7105 1.2304 14 6 1.7026 -2.0360 1.4688 15 6 2.1859 -2.6562 2.6055 16 7 2.9430 -1.9991 3.4622 17 6 3.2720 -0.7367 3.2706 18 6 2.8305 -0.0528 2.1536 19 1 -0.3633 0.5139 0.8901 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 1.6053 -1.7197 -1.2954 23 1 3.1263 -0.7995 -1.2057 24 1 2.9368 -1.8333 -4.7311 25 1 1.0795 -2.5782 0.7730 26 1 1.9370 -3.6897 2.7964 27 1 3.8944 -0.2314 3.9943 28 1 3.1031 0.9814 2.0024 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107548501.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:04 Heat of formation + Delta-G solvation = -7.003654 kcal Electronic energy + Delta-G solvation = -11299.813319 eV Core-core repulsion = 9314.094657 eV Total energy + Delta-G solvation = -1985.718661 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -41.08057 -37.24496 -34.58591 -32.10893 -31.74300 -28.85787 -26.00066 -24.50052 -23.93469 -21.02741 -18.65292 -17.34659 -17.08073 -16.52544 -16.30921 -15.01614 -14.89350 -14.64409 -14.30557 -14.19295 -13.53447 -12.96778 -12.80409 -12.64336 -12.44708 -12.22532 -11.74593 -11.41166 -11.15123 -10.57697 -10.33379 -10.24351 -10.00137 -8.19223 -6.29353 0.28697 0.40653 1.40443 1.41393 1.53896 2.41301 2.96356 3.14864 3.64558 3.83208 3.93239 4.30365 4.31545 4.42056 4.55892 4.63961 4.83074 4.96655 5.08544 5.16807 5.23554 5.40647 5.45873 5.52182 5.78974 5.84415 5.87224 6.23833 6.86608 7.07417 7.39744 8.92943 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.065865 B = 0.008562 C = 0.008299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.010663 B = 3269.459191 C = 3372.945041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.049 4.049 3 H 0.071 0.929 4 C 0.042 3.958 5 C -0.530 4.530 6 H 0.066 0.934 7 C -0.001 4.001 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.259 1.259 11 H -0.282 1.282 12 H -0.280 1.280 13 C -0.033 4.033 14 C -0.179 4.179 15 C 0.091 3.909 16 N -0.515 5.515 17 C 0.093 3.907 18 C -0.182 4.182 19 H 0.061 0.939 20 H 0.056 0.944 21 H 0.047 0.953 22 H -0.003 1.003 23 H -0.019 1.019 24 H 0.262 0.738 25 H 0.129 0.871 26 H 0.177 0.823 27 H 0.184 0.816 28 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.372 2.465 10.152 10.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.067 4.067 3 H 0.090 0.910 4 C 0.005 3.995 5 C -0.568 4.568 6 H 0.084 0.916 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.183 1.183 11 H -0.207 1.207 12 H -0.206 1.206 13 C -0.041 4.041 14 C -0.198 4.198 15 C -0.065 4.065 16 N -0.225 5.225 17 C -0.064 4.064 18 C -0.201 4.201 19 H 0.080 0.920 20 H 0.075 0.925 21 H 0.067 0.933 22 H 0.015 0.985 23 H -0.001 1.001 24 H 0.071 0.929 25 H 0.147 0.853 26 H 0.194 0.806 27 H 0.201 0.799 28 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.004 1.928 10.782 11.135 hybrid contribution -0.267 0.515 -1.936 2.022 sum -2.271 2.443 8.845 9.454 Atomic orbital electron populations 1.21639 0.93432 1.01519 1.01368 1.20233 0.96886 0.98536 0.91087 0.91034 1.18969 0.93915 0.94821 0.91773 1.21668 1.34535 1.08822 0.91802 0.91561 1.25946 0.95121 0.96044 1.02695 1.70115 1.39975 1.23233 1.24321 0.85440 0.78025 0.78953 0.78912 1.18262 1.20750 1.20607 1.20724 0.93802 0.94551 0.95025 1.22147 1.02692 0.95557 0.99452 1.23047 0.92927 1.00729 0.89791 1.67689 1.13518 1.10004 1.31297 1.23171 0.96833 0.90201 0.96179 1.22329 0.99645 1.02530 0.95632 0.92032 0.92477 0.93349 0.98493 1.00073 0.92914 0.85291 0.80646 0.79930 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.34 8.82 71.98 0.64 -3.70 15 2 C -0.05 -1.95 2.54 -11.54 -0.03 -1.98 15 3 H 0.07 2.78 7.95 -2.39 -0.02 2.76 15 4 C 0.04 2.18 4.20 29.85 0.13 2.31 15 5 C -0.53 -29.13 8.41 25.60 0.22 -28.92 15 6 H 0.07 3.46 7.06 -2.91 -0.02 3.44 15 7 C 0.00 -0.04 5.46 84.65 0.46 0.43 15 8 N -0.94 -56.67 13.29 21.45 0.28 -56.38 15 9 Si 0.96 43.58 29.54 68.60 2.03 45.60 15 10 H -0.26 -11.06 7.11 99.48 0.71 -10.35 15 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 15 12 H -0.28 -12.45 7.11 99.48 0.71 -11.75 15 13 C -0.03 -1.17 4.79 -19.67 -0.09 -1.27 15 14 C -0.18 -6.06 8.90 22.36 0.20 -5.86 15 15 C 0.09 2.74 11.18 84.68 0.95 3.68 15 16 N -0.52 -15.89 10.36 -195.84 -2.03 -17.92 15 17 C 0.09 2.56 11.18 84.68 0.95 3.51 15 18 C -0.18 -5.49 9.76 22.36 0.22 -5.27 15 19 H 0.06 1.83 8.14 -2.38 -0.02 1.81 15 20 H 0.06 2.14 6.95 -2.39 -0.02 2.12 15 21 H 0.05 1.69 7.46 -2.39 -0.02 1.68 15 22 H 0.00 -0.18 7.68 -2.39 -0.02 -0.20 15 23 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 15 24 H 0.26 14.93 8.31 -92.71 -0.77 14.16 15 25 H 0.13 4.38 7.35 -2.91 -0.02 4.36 15 26 H 0.18 4.15 8.06 -2.91 -0.02 4.12 15 27 H 0.18 3.64 8.06 -2.91 -0.02 3.61 15 28 H 0.15 3.81 8.01 -2.91 -0.02 3.78 15 Total: -1.00 -64.24 242.91 5.04 -59.21 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.13 Total: 6.56 kcal Atomic # 6 Polarization: -40.70 SS G_CDS: 3.63 Total: -37.07 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -1.74 Total: -74.30 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -64.24 5.04 -59.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107548501.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.206 kcal (2) G-P(sol) polarization free energy of solvation -64.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds