Wall clock time and date at job start Mon Mar 30 2020 02:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36451 * 119.90754 * 2 1 4 4 C 1.40811 * 119.81095 * 179.72253 * 3 2 1 5 5 C 1.41219 * 120.17865 * 179.97438 * 4 3 2 6 6 H 1.07999 * 119.99724 * 153.65609 * 5 4 3 7 7 C 1.39884 * 119.99768 * 333.65208 * 5 4 3 8 8 N 1.30877 * 120.00495 * 343.93898 * 7 5 4 9 9 Si 1.86800 * 120.00068 * 163.93893 * 7 5 4 10 10 H 1.48506 * 109.46971 * 59.99783 * 9 7 5 11 11 H 1.48501 * 109.47529 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47354 * 300.00362 * 9 7 5 13 13 C 1.40854 * 119.64371 * 359.97438 * 4 3 2 14 14 C 1.50696 * 120.09520 * 180.02562 * 13 4 3 15 15 C 1.36413 * 119.80752 * 0.02562 * 13 4 3 16 16 C 1.39290 * 119.90443 * 179.71794 * 2 1 3 17 17 O 1.35682 * 119.82100 * 0.25752 * 16 2 1 18 18 H 1.09008 * 109.46993 * 90.00518 * 1 2 3 19 19 H 1.08998 * 109.47676 * 209.99883 * 1 2 3 20 20 H 1.08994 * 109.47399 * 330.00253 * 1 2 3 21 21 H 1.08007 * 120.09449 * 359.69900 * 3 2 1 22 22 H 0.96997 * 120.00883 * 180.02562 * 8 7 5 23 23 H 1.08997 * 109.47219 * 89.99833 * 14 13 4 24 24 H 1.09000 * 109.46876 * 210.00343 * 14 13 4 25 25 H 1.09001 * 109.46892 * 330.00086 * 14 13 4 26 26 H 1.08003 * 119.90413 * 179.97438 * 15 13 4 27 27 H 0.96704 * 113.99476 * 89.99691 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1874 1.1828 0.0000 4 6 3.5955 1.1804 0.0059 5 6 4.3074 2.4000 0.0054 6 1 5.3018 2.4449 0.4245 7 6 3.7247 3.5498 -0.5380 8 7 2.6775 3.4475 -1.3163 9 14 4.4413 5.2313 -0.1528 10 1 5.8499 5.2879 -0.6197 11 1 3.6481 6.2781 -0.8459 12 1 4.3961 5.4647 1.3131 13 6 4.2901 -0.0449 0.0123 14 6 5.7969 -0.0593 0.0193 15 6 3.5947 -1.2185 0.0122 16 6 2.2014 -1.2074 0.0059 17 8 1.5174 -2.3792 0.0064 18 1 -0.3633 -0.0001 -1.0278 19 1 -0.3634 -0.8899 0.5138 20 1 -0.3634 0.8899 0.5138 21 1 1.6474 2.1182 -0.0049 22 1 2.2737 4.2446 -1.6935 23 1 6.1555 -0.0601 1.0486 24 1 6.1540 -0.9541 -0.4906 25 1 6.1711 0.8258 -0.4952 26 1 4.1257 -2.1590 0.0168 27 1 1.3226 -2.7212 -0.8769 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114909861.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:40 Heat of formation + Delta-G solvation = -45.422571 kcal Electronic energy + Delta-G solvation = -11690.508948 eV Core-core repulsion = 9605.405656 eV Total energy + Delta-G solvation = -2085.103293 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.44319 -35.87157 -33.35785 -32.41255 -29.02499 -28.02868 -25.24243 -23.46459 -21.14837 -19.38652 -17.22058 -16.43724 -15.37726 -14.43564 -14.14892 -13.66280 -12.74677 -12.60008 -12.28851 -11.93105 -11.66298 -11.54132 -11.37078 -11.13494 -11.00429 -10.67778 -10.26571 -9.91581 -9.60012 -9.21553 -8.95353 -7.33700 -7.12108 -6.76185 -4.35514 2.67078 2.97129 3.04671 3.06833 3.14846 3.90219 4.50023 5.41653 5.66000 6.06342 6.11964 6.32450 6.40727 6.45568 6.58747 6.66251 6.75957 6.93397 7.06162 7.23812 7.34758 7.62557 7.66487 7.93718 8.06222 8.23189 8.50977 8.73033 8.85255 9.06437 10.15564 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.043727 B = 0.013096 C = 0.010409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.180603 B = 2137.581549 C = 2689.311574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.094 4.094 3 C -0.151 4.151 4 C 0.111 3.889 5 C -0.455 4.455 6 H 0.081 0.919 7 C 0.074 3.926 8 N -0.793 5.793 9 Si 0.909 3.091 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.263 1.263 13 C -0.191 4.191 14 C -0.084 4.084 15 C -0.105 4.105 16 C -0.040 4.040 17 O -0.502 6.502 18 H 0.051 0.949 19 H 0.055 0.945 20 H 0.052 0.948 21 H 0.121 0.879 22 H 0.281 0.719 23 H 0.042 0.958 24 H 0.038 0.962 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.352 0.648 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 -1.321 -0.018 1.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.094 4.094 3 C -0.170 4.170 4 C 0.108 3.892 5 C -0.484 4.484 6 H 0.099 0.901 7 C -0.144 4.144 8 N -0.418 5.418 9 Si 0.733 3.267 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.188 1.188 13 C -0.193 4.193 14 C -0.141 4.141 15 C -0.123 4.123 16 C -0.085 4.085 17 O -0.309 6.309 18 H 0.070 0.930 19 H 0.074 0.926 20 H 0.071 0.929 21 H 0.139 0.861 22 H 0.092 0.908 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.111 0.889 27 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.210 -1.097 0.458 1.207 hybrid contribution 0.221 0.717 -0.511 0.908 sum 0.011 -0.380 -0.053 0.384 Atomic orbital electron populations 1.20532 0.93482 1.01021 1.00539 1.19580 0.94550 0.93263 1.02045 1.20864 0.94300 0.95884 1.05981 1.17515 0.91785 0.91689 0.88181 1.19527 1.02210 0.92616 1.34091 0.90122 1.25933 0.94288 1.01397 0.92745 1.69829 1.18598 1.31725 1.21652 0.86357 0.79863 0.80596 0.79868 1.18973 1.20336 1.18804 1.19422 0.94508 0.92717 1.12641 1.20401 0.93366 1.00588 0.99743 1.20420 0.92948 0.96673 1.02286 1.17860 0.89281 0.83655 1.17678 1.84804 1.76798 1.38034 1.31229 0.92987 0.92562 0.92923 0.86095 0.90790 0.93955 0.94345 0.91908 0.88923 0.79716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 9.78 36.01 0.35 -1.64 15 2 C -0.09 -2.27 5.86 -104.87 -0.61 -2.88 15 3 C -0.15 -3.96 8.26 -39.25 -0.32 -4.29 15 4 C 0.11 2.95 5.56 -106.80 -0.59 2.36 15 5 C -0.46 -11.85 8.10 -37.83 -0.31 -12.16 15 6 H 0.08 2.00 6.89 -52.49 -0.36 1.64 15 7 C 0.07 1.83 5.16 -17.34 -0.09 1.75 15 8 N -0.79 -20.24 10.97 55.54 0.61 -19.63 15 9 Si 0.91 18.42 29.59 -169.99 -5.03 13.39 15 10 H -0.27 -5.29 7.11 56.52 0.40 -4.89 15 11 H -0.28 -5.50 7.11 56.52 0.40 -5.10 15 12 H -0.26 -5.32 7.11 56.52 0.40 -4.92 15 13 C -0.19 -4.72 5.90 -104.29 -0.62 -5.33 15 14 C -0.08 -1.77 9.40 36.00 0.34 -1.43 15 15 C -0.10 -2.48 9.56 -39.83 -0.38 -2.86 15 16 C -0.04 -0.96 6.70 -38.78 -0.26 -1.22 15 17 O -0.50 -10.48 12.51 -18.75 -0.23 -10.71 15 18 H 0.05 0.97 8.14 -51.92 -0.42 0.55 15 19 H 0.06 1.07 7.52 -51.93 -0.39 0.68 15 20 H 0.05 1.01 8.08 -51.93 -0.42 0.59 15 21 H 0.12 3.25 6.23 -52.48 -0.33 2.92 15 22 H 0.28 6.55 8.30 -40.82 -0.34 6.21 15 23 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 24 H 0.04 0.71 8.08 -51.93 -0.42 0.29 15 25 H 0.06 1.33 6.78 -51.93 -0.35 0.98 15 26 H 0.09 1.99 8.06 -52.48 -0.42 1.56 15 27 H 0.35 5.75 9.06 45.56 0.41 6.17 15 LS Contribution 233.94 15.07 3.53 3.53 Total: -1.00 -28.16 233.94 -5.88 -34.04 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -2.26 Total: 7.08 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: -2.49 Total: -27.70 kcal Atomic # 7 Polarization: -20.24 SS G_CDS: 0.61 Total: -19.63 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.23 Total: -10.71 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -28.16 -5.88 -34.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114909861.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.380 kcal (2) G-P(sol) polarization free energy of solvation -28.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds