Wall clock time and date at job start Mon Mar 30 2020 02:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00122 * 2 1 4 4 H 1.48497 * 109.46877 * 89.99752 * 3 2 1 5 5 H 1.48497 * 109.47359 * 209.99966 * 3 2 1 6 6 H 1.48501 * 109.46883 * 329.99972 * 3 2 1 7 7 C 1.37884 * 119.99919 * 180.27585 * 2 1 3 8 8 H 1.07996 * 119.99740 * 174.43564 * 7 2 1 9 9 C 1.50697 * 119.99887 * 354.43560 * 7 2 1 10 10 H 1.09001 * 109.47124 * 326.24730 * 9 7 2 11 11 C 1.52997 * 109.46964 * 206.25221 * 9 7 2 12 12 O 1.42898 * 109.47637 * 65.75214 * 11 9 7 13 13 C 1.50698 * 109.47130 * 86.24920 * 9 7 2 14 14 C 1.38232 * 119.99839 * 59.72869 * 13 9 7 15 15 C 1.38243 * 119.99637 * 179.78727 * 14 13 9 16 16 C 1.38230 * 119.99876 * 0.43752 * 15 14 13 17 17 C 1.38234 * 120.00339 * 359.81634 * 16 15 14 18 18 C 1.38233 * 119.99645 * 359.97438 * 17 16 15 19 19 H 0.96995 * 119.99948 * 179.25104 * 1 2 3 20 20 H 1.09005 * 109.47367 * 185.75056 * 11 9 7 21 21 H 1.09006 * 109.46923 * 305.75137 * 11 9 7 22 22 H 0.96699 * 114.00444 * 180.02562 * 12 11 9 23 23 H 1.07996 * 120.00259 * 359.97438 * 14 13 9 24 24 H 1.07995 * 119.99524 * 180.27428 * 15 14 13 25 25 H 1.08002 * 119.99950 * 179.83201 * 16 15 14 26 26 H 1.07995 * 119.99887 * 179.97438 * 17 16 15 27 27 H 1.08005 * 119.99783 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 3.0806 -1.1958 -0.0964 9 6 1.2563 -2.4967 0.1145 10 1 0.3856 -2.3577 0.7554 11 6 2.1744 -3.5577 0.7246 12 8 2.4921 -3.1962 2.0701 13 6 0.8075 -2.9462 -1.2520 14 6 1.7417 -3.1826 -2.2432 15 6 1.3303 -3.5993 -3.4955 16 6 -0.0158 -3.7708 -3.7591 17 6 -0.9503 -3.5293 -2.7695 18 6 -0.5386 -3.1169 -1.5160 19 1 -0.4850 -0.8399 -0.0110 20 1 1.6687 -4.5233 0.7176 21 1 3.0919 -3.6238 0.1398 22 1 3.0727 -3.8253 2.5198 23 1 2.7930 -3.0447 -2.0383 24 1 2.0604 -3.7882 -4.2685 25 1 -0.3374 -4.0937 -4.7383 26 1 -2.0019 -3.6629 -2.9757 27 1 -1.2687 -2.9286 -0.7427 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000140467823.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:22 Heat of formation + Delta-G solvation = -39.497737 kcal Electronic energy + Delta-G solvation = -11722.769030 eV Core-core repulsion = 9637.922658 eV Total energy + Delta-G solvation = -2084.846373 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.60598 -36.16843 -33.69859 -31.02814 -30.13532 -27.72253 -24.24843 -22.47132 -21.60706 -19.86315 -16.95941 -16.62430 -15.77955 -14.67827 -14.19563 -13.72803 -13.65316 -12.99889 -12.62138 -12.20469 -12.04848 -11.75088 -11.11416 -10.76427 -10.43365 -10.22428 -10.09535 -9.57563 -9.33906 -8.66931 -8.39362 -8.16434 -7.66987 -6.32970 -4.02019 2.16520 2.21838 3.46803 3.50179 3.65462 4.54372 4.62207 5.09554 5.47156 5.57550 5.61539 5.76117 6.04294 6.08549 6.17039 6.29001 6.41188 6.63317 6.76637 6.88968 7.14375 7.19663 7.33516 7.67595 7.82319 8.15065 8.43246 8.47677 8.89000 9.67142 11.06542 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.030195 B = 0.014949 C = 0.012032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.077530 B = 1872.599853 C = 2326.526643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.021 3.979 3 Si 1.071 2.929 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.286 1.286 7 C -0.573 4.573 8 H 0.051 0.949 9 C 0.055 3.945 10 H 0.047 0.953 11 C 0.098 3.902 12 O -0.558 6.558 13 C -0.031 4.031 14 C -0.111 4.111 15 C -0.129 4.129 16 C -0.152 4.152 17 C -0.124 4.124 18 C -0.126 4.126 19 H 0.271 0.729 20 H 0.017 0.983 21 H 0.032 0.968 22 H 0.357 0.643 23 H 0.114 0.886 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.109 0.891 27 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 -7.270 -3.238 8.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.184 4.184 3 Si 0.900 3.100 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.610 4.610 8 H 0.069 0.931 9 C 0.036 3.964 10 H 0.065 0.935 11 C 0.021 3.979 12 O -0.360 6.360 13 C -0.031 4.031 14 C -0.129 4.129 15 C -0.147 4.147 16 C -0.170 4.170 17 C -0.142 4.142 18 C -0.145 4.145 19 H 0.083 0.917 20 H 0.035 0.965 21 H 0.050 0.950 22 H 0.200 0.800 23 H 0.132 0.868 24 H 0.127 0.873 25 H 0.126 0.874 26 H 0.127 0.873 27 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.551 -5.092 -3.384 6.308 hybrid contribution 0.518 -2.073 -0.047 2.138 sum 2.069 -7.166 -3.431 8.209 Atomic orbital electron populations 1.70748 1.06878 1.30881 1.45763 1.25816 0.96529 1.02660 0.93409 0.83513 0.74631 0.75132 0.76752 1.21362 1.21539 1.21165 1.21700 0.94136 0.90464 1.54737 0.93076 1.18023 0.96018 0.94021 0.88307 0.93514 1.22196 0.97558 0.95868 0.82328 1.86679 1.70715 1.51644 1.26952 1.20658 0.92504 0.91460 0.98513 1.20926 0.99650 0.99576 0.92773 1.21006 0.95560 1.01308 0.96806 1.20839 0.93474 1.04085 0.98573 1.20973 0.98552 1.00795 0.93845 1.21061 0.95932 1.00700 0.96777 0.91739 0.96455 0.94964 0.79975 0.86764 0.87315 0.87439 0.87290 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.68 13.61 55.43 0.75 -26.93 15 2 C 0.02 0.60 5.45 -17.82 -0.10 0.51 15 3 Si 1.07 25.95 29.91 -169.99 -5.08 20.86 15 4 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 7 C -0.57 -16.15 7.71 -34.44 -0.27 -16.41 15 8 H 0.05 1.45 7.82 -52.49 -0.41 1.04 15 9 C 0.06 1.39 1.83 -92.93 -0.17 1.22 15 10 H 0.05 1.30 6.70 -51.93 -0.35 0.95 15 11 C 0.10 2.11 6.14 37.16 0.23 2.34 15 12 O -0.56 -11.91 13.43 -35.23 -0.47 -12.39 15 13 C -0.03 -0.71 4.64 -104.63 -0.49 -1.19 15 14 C -0.11 -2.36 8.87 -39.58 -0.35 -2.71 15 15 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 15 16 C -0.15 -2.68 10.05 -39.59 -0.40 -3.08 15 17 C -0.12 -2.32 10.05 -39.58 -0.40 -2.72 15 18 C -0.13 -2.74 9.05 -39.59 -0.36 -3.10 15 19 H 0.27 8.14 5.94 -40.82 -0.24 7.90 15 20 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 15 21 H 0.03 0.66 7.61 -51.93 -0.40 0.27 15 22 H 0.36 5.32 9.12 45.56 0.42 5.73 15 23 H 0.11 2.36 7.66 -52.49 -0.40 1.96 15 24 H 0.11 1.67 8.06 -52.49 -0.42 1.25 15 25 H 0.11 1.56 8.06 -52.49 -0.42 1.14 15 26 H 0.11 1.73 8.06 -52.49 -0.42 1.31 15 27 H 0.11 2.39 7.82 -52.48 -0.41 1.98 15 LS Contribution 237.08 15.07 3.57 3.57 Total: -1.00 -32.25 237.08 -6.20 -38.45 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -2.28 Total: 4.33 kcal Atomic # 6 Polarization: -25.21 SS G_CDS: -2.69 Total: -27.90 kcal Atomic # 7 Polarization: -27.68 SS G_CDS: 0.75 Total: -26.93 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.47 Total: -12.39 kcal Atomic # 14 Polarization: 25.95 SS G_CDS: -5.08 Total: 20.86 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -32.25 -6.20 -38.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140467823.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.044 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds