Wall clock time and date at job start Mon Mar 30 2020 02:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00122 * 2 1 4 4 H 1.48497 * 109.46877 * 89.99752 * 3 2 1 5 5 H 1.48497 * 109.47359 * 209.99966 * 3 2 1 6 6 H 1.48501 * 109.46883 * 329.99972 * 3 2 1 7 7 C 1.37884 * 119.99919 * 180.27585 * 2 1 3 8 8 H 1.07996 * 119.99740 * 174.43564 * 7 2 1 9 9 C 1.50697 * 119.99887 * 354.43560 * 7 2 1 10 10 H 1.09001 * 109.47124 * 326.24730 * 9 7 2 11 11 C 1.52997 * 109.46964 * 206.25221 * 9 7 2 12 12 O 1.42898 * 109.47637 * 65.75214 * 11 9 7 13 13 C 1.50698 * 109.47130 * 86.24920 * 9 7 2 14 14 C 1.38232 * 119.99839 * 59.72869 * 13 9 7 15 15 C 1.38243 * 119.99637 * 179.78727 * 14 13 9 16 16 C 1.38230 * 119.99876 * 0.43752 * 15 14 13 17 17 C 1.38234 * 120.00339 * 359.81634 * 16 15 14 18 18 C 1.38233 * 119.99645 * 359.97438 * 17 16 15 19 19 H 0.96995 * 119.99948 * 179.25104 * 1 2 3 20 20 H 1.09005 * 109.47367 * 185.75056 * 11 9 7 21 21 H 1.09006 * 109.46923 * 305.75137 * 11 9 7 22 22 H 0.96699 * 114.00444 * 180.02562 * 12 11 9 23 23 H 1.07996 * 120.00259 * 359.97438 * 14 13 9 24 24 H 1.07995 * 119.99524 * 180.27428 * 15 14 13 25 25 H 1.08002 * 119.99950 * 179.83201 * 16 15 14 26 26 H 1.07995 * 119.99887 * 179.97438 * 17 16 15 27 27 H 1.08005 * 119.99783 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 3.0806 -1.1958 -0.0964 9 6 1.2563 -2.4967 0.1145 10 1 0.3856 -2.3577 0.7554 11 6 2.1744 -3.5577 0.7246 12 8 2.4921 -3.1962 2.0701 13 6 0.8075 -2.9462 -1.2520 14 6 1.7417 -3.1826 -2.2432 15 6 1.3303 -3.5993 -3.4955 16 6 -0.0158 -3.7708 -3.7591 17 6 -0.9503 -3.5293 -2.7695 18 6 -0.5386 -3.1169 -1.5160 19 1 -0.4850 -0.8399 -0.0110 20 1 1.6687 -4.5233 0.7176 21 1 3.0919 -3.6238 0.1398 22 1 3.0727 -3.8253 2.5198 23 1 2.7930 -3.0447 -2.0383 24 1 2.0604 -3.7882 -4.2685 25 1 -0.3374 -4.0937 -4.7383 26 1 -2.0019 -3.6629 -2.9757 27 1 -1.2687 -2.9286 -0.7427 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140467823.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:22 Heat of formation + Delta-G solvation = -61.658921 kcal Electronic energy + Delta-G solvation = -11723.730011 eV Core-core repulsion = 9637.922658 eV Total energy + Delta-G solvation = -2085.807354 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.21388 -37.85904 -35.62315 -32.91612 -31.66954 -29.43569 -26.32679 -24.15549 -23.17378 -21.63559 -18.89923 -18.38766 -17.28956 -16.47962 -15.74891 -15.66430 -15.30373 -14.78580 -14.16481 -14.01248 -13.77655 -13.37285 -13.02509 -12.63538 -12.05576 -11.95076 -11.82335 -11.41400 -11.12887 -10.56005 -10.53749 -9.70270 -9.35254 -8.56824 -6.26350 0.61710 0.67091 1.50623 1.60157 1.76442 2.57775 3.03461 3.21423 3.62914 4.07816 4.23205 4.31258 4.35551 4.41211 4.55398 4.73869 4.78741 4.93316 5.14522 5.32874 5.33609 5.68743 5.75178 5.88242 6.13027 6.22342 6.30997 6.64706 7.07902 7.50603 8.82711 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.030195 B = 0.014949 C = 0.012032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.077530 B = 1872.599853 C = 2326.526643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.034 4.034 3 Si 1.113 2.887 4 H -0.277 1.277 5 H -0.270 1.270 6 H -0.286 1.286 7 C -0.577 4.577 8 H 0.044 0.956 9 C 0.050 3.950 10 H 0.006 0.994 11 C 0.104 3.896 12 O -0.583 6.583 13 C -0.057 4.057 14 C -0.129 4.129 15 C -0.123 4.123 16 C -0.142 4.142 17 C -0.123 4.123 18 C -0.151 4.151 19 H 0.261 0.739 20 H 0.038 0.962 21 H 0.043 0.957 22 H 0.385 0.615 23 H 0.112 0.888 24 H 0.146 0.854 25 H 0.151 0.849 26 H 0.139 0.861 27 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.907 -8.051 -5.045 9.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.232 4.232 3 Si 0.936 3.064 4 H -0.203 1.203 5 H -0.195 1.195 6 H -0.212 1.212 7 C -0.615 4.615 8 H 0.063 0.937 9 C 0.031 3.969 10 H 0.025 0.975 11 C 0.027 3.973 12 O -0.390 6.390 13 C -0.058 4.058 14 C -0.147 4.147 15 C -0.140 4.140 16 C -0.160 4.160 17 C -0.141 4.141 18 C -0.169 4.169 19 H 0.072 0.928 20 H 0.056 0.944 21 H 0.061 0.939 22 H 0.233 0.767 23 H 0.130 0.870 24 H 0.164 0.836 25 H 0.169 0.831 26 H 0.156 0.844 27 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.336 -5.913 -5.179 8.200 hybrid contribution 0.274 -1.957 0.497 2.038 sum 2.610 -7.871 -4.682 9.523 Atomic orbital electron populations 1.70840 1.07812 1.30373 1.48569 1.27162 0.96702 1.06283 0.93081 0.82983 0.74297 0.71692 0.77445 1.20305 1.19476 1.21153 1.21984 0.93927 0.92016 1.53554 0.93735 1.17988 0.94902 0.94445 0.89567 0.97538 1.22054 0.97413 0.95425 0.82414 1.86601 1.71801 1.53472 1.27078 1.20460 0.93663 0.94004 0.97681 1.21023 0.99195 1.00677 0.93775 1.21422 0.96974 0.99388 0.96254 1.21353 0.92819 1.01895 0.99883 1.21332 1.00625 0.99451 0.92697 1.21129 0.95285 1.02308 0.98189 0.92832 0.94366 0.93884 0.76726 0.87005 0.83629 0.83138 0.84351 0.88499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.09 13.61 21.45 0.29 -58.80 15 2 C -0.03 -2.01 5.45 84.66 0.46 -1.55 15 3 Si 1.11 52.50 29.91 68.60 2.05 54.55 15 4 H -0.28 -12.50 7.11 99.48 0.71 -11.80 15 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 15 6 H -0.29 -13.36 7.11 99.48 0.71 -12.65 15 7 C -0.58 -33.15 7.71 25.60 0.20 -32.95 15 8 H 0.04 2.54 7.82 -2.91 -0.02 2.52 15 9 C 0.05 2.59 1.83 -12.29 -0.02 2.57 15 10 H 0.01 0.38 6.70 -2.39 -0.02 0.36 15 11 C 0.10 4.50 6.14 71.98 0.44 4.94 15 12 O -0.58 -24.81 13.43 -148.98 -2.00 -26.81 15 13 C -0.06 -2.69 4.64 -19.87 -0.09 -2.78 15 14 C -0.13 -5.30 8.87 22.27 0.20 -5.10 15 15 C -0.12 -4.09 10.05 22.27 0.22 -3.87 15 16 C -0.14 -4.43 10.05 22.27 0.22 -4.21 15 17 C -0.12 -4.35 10.05 22.27 0.22 -4.13 15 18 C -0.15 -6.60 9.05 22.27 0.20 -6.39 15 19 H 0.26 16.47 5.94 -92.71 -0.55 15.92 15 20 H 0.04 1.47 8.14 -2.38 -0.02 1.45 15 21 H 0.04 1.74 7.61 -2.38 -0.02 1.72 15 22 H 0.39 11.03 9.12 -74.06 -0.68 10.35 15 23 H 0.11 4.54 7.66 -2.91 -0.02 4.51 15 24 H 0.15 3.76 8.06 -2.91 -0.02 3.73 15 25 H 0.15 3.46 8.06 -2.91 -0.02 3.43 15 26 H 0.14 3.99 8.06 -2.91 -0.02 3.96 15 27 H 0.10 4.37 7.82 -2.91 -0.02 4.35 15 Total: -1.00 -70.79 237.08 3.10 -67.69 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.70 Total: 16.84 kcal Atomic # 6 Polarization: -55.53 SS G_CDS: 2.06 Total: -53.48 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.29 Total: -58.80 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -2.00 Total: -26.81 kcal Atomic # 14 Polarization: 52.50 SS G_CDS: 2.05 Total: 54.55 kcal Total: -70.79 3.10 -67.69 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140467823.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.032 kcal (2) G-P(sol) polarization free energy of solvation -70.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds