Wall clock time and date at job start Mon Mar 30 2020 02:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99867 * 2 1 4 4 H 1.48497 * 109.47147 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47140 * 300.00397 * 3 2 1 6 6 H 1.48506 * 109.46879 * 60.00481 * 3 2 1 7 7 C 1.37873 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99848 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00259 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.46923 * 300.00145 * 9 7 2 11 11 C 1.52999 * 109.47130 * 59.99876 * 9 7 2 12 12 O 1.42903 * 109.47256 * 185.00526 * 11 9 7 13 13 C 1.50703 * 109.47177 * 179.97438 * 9 7 2 14 14 C 1.38225 * 120.00198 * 299.72320 * 13 9 7 15 15 C 1.38240 * 120.00306 * 179.78891 * 14 13 9 16 16 C 1.38237 * 119.99660 * 0.44008 * 15 14 13 17 17 C 1.38241 * 119.99751 * 359.81513 * 16 15 14 18 18 C 1.38232 * 120.00094 * 359.97438 * 17 16 15 19 19 H 0.96999 * 120.00393 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.47286 * 65.00087 * 11 9 7 21 21 H 1.09008 * 109.47201 * 304.99867 * 11 9 7 22 22 H 0.96700 * 114.00311 * 180.02562 * 12 11 9 23 23 H 1.08004 * 120.00071 * 0.02562 * 14 13 9 24 24 H 1.07997 * 120.00113 * 180.27884 * 15 14 13 25 25 H 1.07995 * 120.00245 * 179.83216 * 16 15 14 26 26 H 1.07995 * 119.99818 * 179.97438 * 17 16 15 27 27 H 1.08005 * 119.99721 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5570 0.8897 11 6 0.3709 -2.5799 -1.2494 12 8 -0.4300 -3.7620 -1.1921 13 6 2.2304 -3.6446 -0.0018 14 6 3.1298 -3.7837 -1.0421 15 6 4.0311 -4.8319 -1.0411 16 6 4.0268 -5.7461 -0.0042 17 6 3.1237 -5.6099 1.0335 18 6 2.2254 -4.5593 1.0346 19 1 -0.4851 0.8400 0.0004 20 1 1.0022 -2.6114 -2.1374 21 1 -0.2766 -1.7042 -1.2949 22 1 -1.0141 -3.8787 -1.9539 23 1 3.1311 -3.0713 -1.8539 24 1 4.7369 -4.9380 -1.8517 25 1 4.7290 -6.5666 -0.0047 26 1 3.1200 -6.3244 1.8434 27 1 1.5201 -4.4527 1.8456 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000140467983.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:23 Heat of formation + Delta-G solvation = -57.104309 kcal Electronic energy + Delta-G solvation = -11659.250461 eV Core-core repulsion = 9573.640611 eV Total energy + Delta-G solvation = -2085.609851 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.11953 -37.67470 -35.41640 -33.08848 -31.61199 -29.38800 -26.63025 -24.07732 -23.17098 -21.28209 -18.66540 -17.73753 -17.64323 -16.51346 -16.00099 -15.63411 -15.04648 -14.49172 -14.29566 -14.01945 -13.56505 -13.27542 -12.81627 -12.76339 -12.27957 -12.12101 -11.68759 -11.45106 -11.19316 -10.88597 -10.35029 -9.64473 -9.31079 -8.18397 -6.35074 0.67166 0.73606 1.39622 1.41673 1.54096 2.38668 3.03346 3.15020 3.88818 4.15800 4.26309 4.33349 4.44895 4.63599 4.83281 4.87773 4.97657 5.26551 5.32292 5.44167 5.54883 5.70568 5.73980 5.86867 6.08167 6.25137 6.36225 6.74617 7.10929 7.34092 8.86132 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.039922 B = 0.012410 C = 0.010685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.190665 B = 2255.672914 C = 2619.801048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.279 1.279 7 C -0.525 4.525 8 H 0.058 0.942 9 C 0.079 3.921 10 H -0.001 1.001 11 C 0.091 3.909 12 O -0.595 6.595 13 C -0.055 4.055 14 C -0.134 4.134 15 C -0.123 4.123 16 C -0.142 4.142 17 C -0.121 4.121 18 C -0.149 4.149 19 H 0.266 0.734 20 H 0.024 0.976 21 H 0.057 0.943 22 H 0.379 0.621 23 H 0.109 0.891 24 H 0.144 0.856 25 H 0.151 0.849 26 H 0.143 0.857 27 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.284 -7.139 -2.407 9.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.205 1.205 7 C -0.563 4.563 8 H 0.076 0.924 9 C 0.061 3.939 10 H 0.017 0.983 11 C 0.013 3.987 12 O -0.402 6.402 13 C -0.055 4.055 14 C -0.152 4.152 15 C -0.141 4.141 16 C -0.160 4.160 17 C -0.139 4.139 18 C -0.167 4.167 19 H 0.075 0.925 20 H 0.042 0.958 21 H 0.075 0.925 22 H 0.226 0.774 23 H 0.127 0.873 24 H 0.161 0.839 25 H 0.169 0.831 26 H 0.161 0.839 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.457 -7.088 -1.839 9.133 hybrid contribution -0.415 1.262 -0.412 1.391 sum 5.043 -5.826 -2.251 8.027 Atomic orbital electron populations 1.70016 1.07308 1.27699 1.50557 1.25847 0.95765 1.02736 0.94144 0.85422 0.78960 0.78919 0.77918 1.19117 1.19951 1.20488 1.21319 0.93014 0.90422 1.51501 0.92396 1.17722 0.91337 0.91442 0.93402 0.98299 1.22349 0.92924 0.85944 0.97450 1.86440 1.58718 1.45964 1.49069 1.20335 0.95880 0.95077 0.94230 1.21057 0.96622 0.98928 0.98594 1.21404 0.98574 0.94467 0.99626 1.21369 0.99984 1.00260 0.94353 1.21357 0.95423 0.97499 0.99598 1.21190 1.00501 0.96286 0.98720 0.92505 0.95772 0.92474 0.77418 0.87315 0.83863 0.83089 0.83905 0.87769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.70 11.29 21.45 0.24 -52.46 15 2 C 0.01 0.78 5.29 84.65 0.45 1.23 15 3 Si 0.96 43.14 29.54 68.60 2.03 45.16 15 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 15 5 H -0.27 -11.82 7.11 99.48 0.71 -11.12 15 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 15 7 C -0.52 -29.34 8.25 25.60 0.21 -29.13 15 8 H 0.06 3.22 7.61 -2.91 -0.02 3.20 15 9 C 0.08 4.27 2.19 -12.29 -0.03 4.24 15 10 H 0.00 -0.07 7.88 -2.39 -0.02 -0.09 15 11 C 0.09 4.55 6.16 71.98 0.44 4.99 15 12 O -0.60 -26.90 13.41 -148.98 -2.00 -28.90 15 13 C -0.06 -2.58 4.50 -19.87 -0.09 -2.67 15 14 C -0.13 -5.55 8.66 22.27 0.19 -5.35 15 15 C -0.12 -4.04 10.05 22.27 0.22 -3.82 15 16 C -0.14 -4.24 10.05 22.27 0.22 -4.01 15 17 C -0.12 -4.00 10.05 22.27 0.22 -3.78 15 18 C -0.15 -6.24 9.67 22.27 0.22 -6.03 15 19 H 0.27 14.35 8.31 -92.71 -0.77 13.58 15 20 H 0.02 1.15 7.21 -2.39 -0.02 1.13 15 21 H 0.06 3.13 5.95 -2.38 -0.01 3.12 15 22 H 0.38 12.74 9.12 -74.06 -0.68 12.06 15 23 H 0.11 4.55 7.53 -2.91 -0.02 4.53 15 24 H 0.14 3.67 8.06 -2.91 -0.02 3.65 15 25 H 0.15 3.24 8.06 -2.91 -0.02 3.22 15 26 H 0.14 3.69 8.06 -2.91 -0.02 3.67 15 27 H 0.10 4.38 7.95 -2.91 -0.02 4.36 15 Total: -1.00 -64.58 236.15 2.82 -61.76 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.49 Total: 18.77 kcal Atomic # 6 Polarization: -46.40 SS G_CDS: 2.07 Total: -44.33 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.24 Total: -52.46 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -2.00 Total: -28.90 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Total: -64.58 2.82 -61.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000140467983.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.658 kcal (2) G-P(sol) polarization free energy of solvation -64.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds