Wall clock time and date at job start Mon Mar 30 2020 02:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35905 * 117.00103 * 2 1 4 4 C 1.39155 * 119.93155 * 359.97438 * 3 2 1 5 5 C 1.38519 * 120.44317 * 180.02562 * 4 3 2 6 6 C 1.37668 * 120.30635 * 359.97438 * 5 4 3 7 7 C 1.40732 * 119.85090 * 0.02562 * 6 5 4 8 8 C 1.41407 * 120.21058 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99752 * 153.76817 * 8 7 6 10 10 C 1.39931 * 120.00440 * 333.76997 * 8 7 6 11 11 N 1.30831 * 119.99743 * 343.93051 * 10 8 7 12 12 Si 1.86792 * 120.00320 * 163.93414 * 10 8 7 13 13 H 1.48497 * 109.47444 * 89.99670 * 12 10 8 14 14 H 1.48498 * 109.47104 * 209.99746 * 12 10 8 15 15 H 1.48501 * 109.47235 * 329.99817 * 12 10 8 16 16 C 1.38096 * 119.92833 * 179.97438 * 3 2 1 17 17 C 1.50699 * 120.15760 * 0.25699 * 16 3 2 18 18 H 1.09000 * 109.46882 * 59.99774 * 1 2 3 19 19 H 1.09000 * 109.46948 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.46974 * 300.00009 * 1 2 3 21 21 H 1.08000 * 119.77618 * 0.03510 * 4 3 2 22 22 H 1.07999 * 119.84323 * 179.97438 * 5 4 3 23 23 H 1.07994 * 120.06909 * 179.97438 * 6 5 4 24 24 H 0.97000 * 120.00164 * 180.02562 * 11 10 8 25 25 H 1.09000 * 109.46776 * 269.71826 * 17 16 3 26 26 H 1.09001 * 109.47075 * 29.71905 * 17 16 3 27 27 H 1.09000 * 109.46862 * 149.71688 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2868 2.3771 -0.0005 5 6 1.9046 3.6168 -0.0011 6 6 3.2783 3.7085 -0.0006 7 6 4.0585 2.5372 0.0000 8 6 5.4700 2.6225 0.0000 9 1 6.0595 1.8177 0.4138 10 6 6.1029 3.7495 -0.5361 11 7 5.4365 4.5683 -1.3088 12 14 7.8991 4.0847 -0.1486 13 1 8.7565 3.4263 -1.1667 14 1 8.1446 5.5492 -0.1671 15 1 8.2245 3.5453 1.1962 16 6 3.4252 1.2814 0.0005 17 6 4.2479 0.0188 -0.0047 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 0.2086 2.3151 -0.0004 22 1 1.3059 4.5157 -0.0019 23 1 3.7560 4.6770 -0.0014 24 1 5.8753 5.3494 -1.6807 25 1 4.4502 -0.2872 1.0217 26 1 3.6985 -0.7706 -0.5177 27 1 5.1898 0.2011 -0.5220 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000142645889.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:42 Heat of formation + Delta-G solvation = -32.087933 kcal Electronic energy + Delta-G solvation = -11682.304497 eV Core-core repulsion = 9597.779438 eV Total energy + Delta-G solvation = -2084.525059 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.80374 -36.35035 -33.36139 -31.47072 -28.96453 -26.73179 -25.91724 -24.55254 -20.66509 -19.80095 -17.62550 -15.86409 -15.25518 -14.86719 -14.78703 -14.07684 -13.16403 -12.79785 -12.40351 -12.08036 -11.53439 -11.33290 -11.20610 -10.98885 -10.91951 -10.61803 -10.42177 -9.85297 -9.74112 -9.23949 -9.09811 -7.33099 -6.84176 -6.67959 -4.37480 2.77648 3.06220 3.08139 3.12443 3.23806 3.93061 4.30423 4.63239 5.62614 5.66033 5.74098 5.89520 6.21157 6.29518 6.60686 6.77091 6.83137 6.92173 7.04108 7.13192 7.29727 7.59310 7.76370 7.88924 8.07660 8.16093 8.48503 8.71100 8.91502 8.99696 10.19480 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.060547 B = 0.011282 C = 0.009788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.340443 B = 2481.237946 C = 2860.095507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.329 6.329 3 C 0.138 3.862 4 C -0.318 4.318 5 C -0.082 4.082 6 C -0.185 4.185 7 C 0.137 3.863 8 C -0.455 4.455 9 H 0.082 0.918 10 C 0.076 3.924 11 N -0.792 5.792 12 Si 0.909 3.091 13 H -0.269 1.269 14 H -0.276 1.276 15 H -0.260 1.260 16 C -0.224 4.224 17 C -0.074 4.074 18 H 0.044 0.956 19 H 0.082 0.918 20 H 0.044 0.956 21 H 0.093 0.907 22 H 0.089 0.911 23 H 0.118 0.882 24 H 0.280 0.720 25 H 0.037 0.963 26 H 0.041 0.959 27 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.748 -2.654 1.447 4.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.244 6.244 3 C 0.095 3.905 4 C -0.338 4.338 5 C -0.100 4.100 6 C -0.205 4.205 7 C 0.135 3.865 8 C -0.485 4.485 9 H 0.100 0.900 10 C -0.142 4.142 11 N -0.417 5.417 12 Si 0.733 3.267 13 H -0.195 1.195 14 H -0.201 1.201 15 H -0.184 1.184 16 C -0.226 4.226 17 C -0.130 4.130 18 H 0.063 0.937 19 H 0.101 0.899 20 H 0.063 0.937 21 H 0.111 0.889 22 H 0.107 0.893 23 H 0.136 0.864 24 H 0.091 0.909 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.625 -2.626 1.296 3.933 hybrid contribution 0.379 0.523 0.022 0.646 sum -2.246 -2.103 1.318 3.347 Atomic orbital electron populations 1.22750 0.80809 1.01752 1.00604 1.85962 1.19444 1.29099 1.89885 1.18570 0.91626 0.82513 0.97807 1.20405 0.97074 0.92685 1.23647 1.20440 0.95025 0.94962 0.99609 1.21255 0.91901 0.99072 1.08242 1.17275 0.93209 0.89349 0.86713 1.19561 0.91526 1.02823 1.34548 0.90014 1.25934 1.00665 0.94942 0.92673 1.69842 1.38443 1.11535 1.21890 0.86306 0.82000 0.78200 0.80206 1.19459 1.20130 1.18393 1.19125 0.89299 0.95503 1.18693 1.20191 0.98832 0.94557 0.99445 0.93690 0.89949 0.93699 0.88901 0.89304 0.86395 0.90883 0.94419 0.93994 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.81 101.05 0.99 1.58 15 2 O -0.33 -7.10 9.52 -19.44 -0.19 -7.29 15 3 C 0.14 3.38 6.65 -39.29 -0.26 3.12 15 4 C -0.32 -7.49 9.05 -39.14 -0.35 -7.84 15 5 C -0.08 -1.99 10.02 -39.69 -0.40 -2.39 15 6 C -0.19 -4.95 8.68 -38.85 -0.34 -5.29 15 7 C 0.14 3.75 5.56 -106.84 -0.59 3.16 15 8 C -0.46 -12.12 8.11 -37.74 -0.31 -12.42 15 9 H 0.08 2.08 6.90 -52.48 -0.36 1.72 15 10 C 0.08 1.91 5.16 -17.34 -0.09 1.82 15 11 N -0.79 -20.58 10.97 55.55 0.61 -19.97 15 12 Si 0.91 18.64 29.59 -169.99 -5.03 13.61 15 13 H -0.27 -5.45 7.11 56.52 0.40 -5.04 15 14 H -0.28 -5.53 7.11 56.52 0.40 -5.13 15 15 H -0.26 -5.29 7.11 56.52 0.40 -4.89 15 16 C -0.22 -5.80 5.95 -103.77 -0.62 -6.41 15 17 C -0.07 -1.67 9.18 36.01 0.33 -1.34 15 18 H 0.04 0.70 7.65 -51.93 -0.40 0.30 15 19 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 20 H 0.04 0.69 7.65 -51.93 -0.40 0.29 15 21 H 0.09 1.92 6.27 -52.49 -0.33 1.59 15 22 H 0.09 1.92 8.06 -52.49 -0.42 1.49 15 23 H 0.12 3.21 6.22 -52.49 -0.33 2.88 15 24 H 0.28 6.60 8.30 -40.82 -0.34 6.27 15 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 15 26 H 0.04 0.89 7.52 -51.93 -0.39 0.50 15 27 H 0.06 1.31 6.80 -51.93 -0.35 0.96 15 LS Contribution 231.21 15.07 3.48 3.48 Total: -1.00 -28.54 231.21 -5.72 -34.25 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -2.96 Total: 1.94 kcal Atomic # 6 Polarization: -24.39 SS G_CDS: -1.64 Total: -26.02 kcal Atomic # 7 Polarization: -20.58 SS G_CDS: 0.61 Total: -19.97 kcal Atomic # 8 Polarization: -7.10 SS G_CDS: -0.19 Total: -7.29 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.54 -5.72 -34.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142645889.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.166 kcal (2) G-P(sol) polarization free energy of solvation -28.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds