Wall clock time and date at job start Mon Mar 30 2020 02:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35905 * 117.00103 * 2 1 4 4 C 1.39155 * 119.93155 * 359.97438 * 3 2 1 5 5 C 1.38519 * 120.44317 * 180.02562 * 4 3 2 6 6 C 1.37668 * 120.30635 * 359.97438 * 5 4 3 7 7 C 1.40732 * 119.85090 * 0.02562 * 6 5 4 8 8 C 1.41407 * 120.21058 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99752 * 153.76817 * 8 7 6 10 10 C 1.39931 * 120.00440 * 333.76997 * 8 7 6 11 11 N 1.30831 * 119.99743 * 343.93051 * 10 8 7 12 12 Si 1.86792 * 120.00320 * 163.93414 * 10 8 7 13 13 H 1.48497 * 109.47444 * 89.99670 * 12 10 8 14 14 H 1.48498 * 109.47104 * 209.99746 * 12 10 8 15 15 H 1.48501 * 109.47235 * 329.99817 * 12 10 8 16 16 C 1.38096 * 119.92833 * 179.97438 * 3 2 1 17 17 C 1.50699 * 120.15760 * 0.25699 * 16 3 2 18 18 H 1.09000 * 109.46882 * 59.99774 * 1 2 3 19 19 H 1.09000 * 109.46948 * 179.97438 * 1 2 3 20 20 H 1.08999 * 109.46974 * 300.00009 * 1 2 3 21 21 H 1.08000 * 119.77618 * 0.03510 * 4 3 2 22 22 H 1.07999 * 119.84323 * 179.97438 * 5 4 3 23 23 H 1.07994 * 120.06909 * 179.97438 * 6 5 4 24 24 H 0.97000 * 120.00164 * 180.02562 * 11 10 8 25 25 H 1.09000 * 109.46776 * 269.71826 * 17 16 3 26 26 H 1.09001 * 109.47075 * 29.71905 * 17 16 3 27 27 H 1.09000 * 109.46862 * 149.71688 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2868 2.3771 -0.0005 5 6 1.9046 3.6168 -0.0011 6 6 3.2783 3.7085 -0.0006 7 6 4.0585 2.5372 0.0000 8 6 5.4700 2.6225 0.0000 9 1 6.0595 1.8177 0.4138 10 6 6.1029 3.7495 -0.5361 11 7 5.4365 4.5683 -1.3088 12 14 7.8991 4.0847 -0.1486 13 1 8.7565 3.4263 -1.1667 14 1 8.1446 5.5492 -0.1671 15 1 8.2245 3.5453 1.1962 16 6 3.4252 1.2814 0.0005 17 6 4.2479 0.0188 -0.0047 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 0.2086 2.3151 -0.0004 22 1 1.3059 4.5157 -0.0019 23 1 3.7560 4.6770 -0.0014 24 1 5.8753 5.3494 -1.6807 25 1 4.4502 -0.2872 1.0217 26 1 3.6985 -0.7706 -0.5177 27 1 5.1898 0.2011 -0.5220 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000142645889.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:42 Heat of formation + Delta-G solvation = -48.472691 kcal Electronic energy + Delta-G solvation = -11683.014994 eV Core-core repulsion = 9597.779438 eV Total energy + Delta-G solvation = -2085.235556 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.56067 -38.14133 -35.24915 -33.33655 -30.82744 -28.19985 -27.79246 -26.40998 -22.52164 -21.67436 -19.44945 -17.72479 -16.98582 -16.51613 -16.39610 -15.95274 -14.90041 -14.50997 -14.15616 -13.84459 -13.29354 -12.97911 -12.95753 -12.74729 -12.57112 -12.30511 -12.08339 -11.63123 -11.58639 -11.08263 -10.96936 -9.27619 -8.71650 -8.55806 -6.36181 0.93763 1.14792 1.40510 1.51462 1.57012 2.22127 2.72135 2.76065 3.69498 4.32146 4.46532 4.47942 4.53009 4.73500 4.77110 4.95498 5.04346 5.07456 5.14663 5.27090 5.38190 5.73965 5.86339 5.99918 6.12456 6.21723 6.58722 6.84230 6.96145 7.08693 8.34454 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.060547 B = 0.011282 C = 0.009788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.340443 B = 2481.237946 C = 2860.095507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.341 6.341 3 C 0.136 3.864 4 C -0.319 4.319 5 C -0.084 4.084 6 C -0.215 4.215 7 C 0.108 3.892 8 C -0.487 4.487 9 H 0.082 0.918 10 C 0.035 3.965 11 N -0.824 5.824 12 Si 0.984 3.016 13 H -0.261 1.261 14 H -0.267 1.267 15 H -0.258 1.258 16 C -0.255 4.255 17 C -0.065 4.065 18 H 0.051 0.949 19 H 0.120 0.880 20 H 0.054 0.946 21 H 0.125 0.875 22 H 0.114 0.886 23 H 0.103 0.897 24 H 0.288 0.712 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.159 -3.160 1.644 4.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.255 6.255 3 C 0.092 3.908 4 C -0.338 4.338 5 C -0.103 4.103 6 C -0.235 4.235 7 C 0.105 3.895 8 C -0.516 4.516 9 H 0.100 0.900 10 C -0.180 4.180 11 N -0.450 5.450 12 Si 0.804 3.196 13 H -0.186 1.186 14 H -0.191 1.191 15 H -0.181 1.181 16 C -0.257 4.257 17 C -0.121 4.121 18 H 0.070 0.930 19 H 0.138 0.862 20 H 0.073 0.927 21 H 0.143 0.857 22 H 0.132 0.868 23 H 0.121 0.879 24 H 0.099 0.901 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.066 -3.146 1.492 4.639 hybrid contribution 0.327 0.613 -0.053 0.697 sum -2.739 -2.533 1.439 3.999 Atomic orbital electron populations 1.23152 0.77771 1.04623 1.01355 1.85939 1.22507 1.27624 1.89447 1.18701 0.91574 0.83872 0.96701 1.20766 0.98744 0.92015 1.22310 1.20757 0.94456 0.96596 0.98475 1.21261 0.93131 0.98430 1.10676 1.17654 0.94047 0.90290 0.87461 1.19809 0.91777 1.04059 1.35912 0.89993 1.26811 1.05288 0.94113 0.91804 1.69897 1.40545 1.12089 1.22441 0.85178 0.76012 0.78400 0.79980 1.18609 1.19105 1.18149 1.19541 0.90794 0.96059 1.19324 1.20122 0.98234 0.93721 1.00068 0.93001 0.86215 0.92728 0.85722 0.86770 0.87914 0.90100 0.93459 0.92932 0.92994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.81 113.37 1.11 1.85 15 2 O -0.34 -13.94 9.52 -92.49 -0.88 -14.82 15 3 C 0.14 6.49 6.65 22.46 0.15 6.64 15 4 C -0.32 -14.47 9.05 22.56 0.20 -14.26 15 5 C -0.08 -4.07 10.02 22.20 0.22 -3.85 15 6 C -0.22 -11.75 8.68 22.74 0.20 -11.55 15 7 C 0.11 6.04 5.56 -21.30 -0.12 5.92 15 8 C -0.49 -26.48 8.11 23.46 0.19 -26.29 15 9 H 0.08 4.28 6.90 -2.91 -0.02 4.26 15 10 C 0.03 1.77 5.16 85.25 0.44 2.21 15 11 N -0.82 -43.57 10.97 21.82 0.24 -43.34 15 12 Si 0.98 38.24 29.59 68.60 2.03 40.27 15 13 H -0.26 -9.76 7.11 99.48 0.71 -9.06 15 14 H -0.27 -9.85 7.11 99.48 0.71 -9.14 15 15 H -0.26 -9.82 7.11 99.48 0.71 -9.11 15 16 C -0.26 -13.26 5.95 -19.31 -0.11 -13.37 15 17 C -0.06 -2.93 9.18 71.24 0.65 -2.28 15 18 H 0.05 1.43 7.65 -2.39 -0.02 1.41 15 19 H 0.12 2.55 8.14 -2.39 -0.02 2.53 15 20 H 0.05 1.48 7.65 -2.39 -0.02 1.46 15 21 H 0.12 4.75 6.27 -2.91 -0.02 4.73 15 22 H 0.11 4.77 8.06 -2.91 -0.02 4.75 15 23 H 0.10 5.79 6.22 -2.91 -0.02 5.77 15 24 H 0.29 13.72 8.30 -92.71 -0.77 12.95 15 25 H 0.05 1.99 8.14 -2.39 -0.02 1.97 15 26 H 0.05 2.20 7.52 -2.39 -0.02 2.18 15 27 H 0.05 2.36 6.80 -2.39 -0.02 2.34 15 Total: -1.00 -61.31 231.21 5.49 -55.82 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 1.16 Total: 17.06 kcal Atomic # 6 Polarization: -57.92 SS G_CDS: 2.94 Total: -54.99 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.24 Total: -43.34 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.88 Total: -14.82 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -61.31 5.49 -55.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000142645889.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.347 kcal (2) G-P(sol) polarization free energy of solvation -61.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds