Wall clock time and date at job start Mon Mar 30 2020 02:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86793 * 119.99873 * 2 1 4 4 H 1.48504 * 109.47163 * 240.00189 * 3 2 1 5 5 H 1.48493 * 109.47398 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47268 * 120.00272 * 3 2 1 7 7 C 1.39949 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99446 * 197.83802 * 7 2 1 9 9 C 1.41391 * 120.00394 * 17.83971 * 7 2 1 10 10 C 1.40709 * 120.24881 * 204.37955 * 9 7 2 11 11 C 1.37613 * 119.74954 * 180.29949 * 10 9 7 12 12 C 1.38640 * 120.24543 * 359.42165 * 11 10 9 13 13 C 1.50697 * 119.74952 * 180.30058 * 12 11 10 14 14 C 1.53001 * 109.47686 * 270.30321 * 13 12 11 15 15 O 1.42893 * 109.47306 * 179.97438 * 14 13 12 16 16 C 1.38637 * 120.49973 * 0.60778 * 12 11 10 17 17 C 1.37615 * 120.24590 * 359.67285 * 16 12 11 18 18 H 0.97001 * 120.00110 * 359.97438 * 1 2 3 19 19 H 1.08008 * 120.12610 * 0.02845 * 10 9 7 20 20 H 1.07998 * 119.88111 * 179.72526 * 11 10 9 21 21 H 1.09008 * 109.47282 * 30.30451 * 13 12 11 22 22 H 1.09004 * 109.47165 * 150.29782 * 13 12 11 23 23 H 1.09003 * 109.46409 * 300.00329 * 14 13 12 24 24 H 1.09001 * 109.46773 * 59.99626 * 14 13 12 25 25 H 0.96700 * 113.99926 * 179.97438 * 15 14 13 26 26 H 1.08003 * 119.87139 * 179.69780 * 16 12 11 27 27 H 1.08004 * 120.12443 * 180.02562 * 17 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2773 2.7464 0.0006 6 1 3.0960 1.6964 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0491 -1.2346 0.2860 9 6 1.3520 -2.4069 -0.3762 10 6 1.8258 -3.6499 0.0824 11 6 1.1833 -4.8069 -0.2946 12 6 0.0659 -4.7502 -1.1133 13 6 -0.6332 -6.0237 -1.5137 14 6 -0.0176 -6.5582 -2.8084 15 8 -0.6801 -7.7661 -3.1877 16 6 -0.4095 -3.5311 -1.5715 17 6 0.2208 -2.3619 -1.2119 18 1 -0.4850 0.8400 0.0004 19 1 2.6932 -3.6961 0.7243 20 1 1.5478 -5.7624 0.0526 21 1 -0.5180 -6.7655 -0.7233 22 1 -1.6929 -5.8225 -1.6713 23 1 -0.1329 -5.8164 -3.5987 24 1 1.0420 -6.7594 -2.6508 25 1 -0.3409 -8.1616 -4.0023 26 1 -1.2779 -3.4991 -2.2129 27 1 -0.1514 -1.4132 -1.5697 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000143080189.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:16 Heat of formation + Delta-G solvation = -51.256081 kcal Electronic energy + Delta-G solvation = -11251.430873 eV Core-core repulsion = 9166.074621 eV Total energy + Delta-G solvation = -2085.356253 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.84928 -36.46462 -33.96706 -31.61903 -29.31492 -28.30311 -24.91606 -22.17197 -20.99153 -19.70997 -17.30494 -17.10893 -15.34503 -14.81799 -14.17364 -13.76787 -13.57799 -13.32376 -12.51148 -11.95525 -11.64850 -11.40162 -11.21752 -11.03006 -10.79351 -10.51989 -10.31852 -9.67470 -9.59062 -9.37195 -9.11848 -7.47357 -7.31072 -6.77287 -4.36050 2.74620 3.04520 3.06137 3.07916 3.18761 3.91805 4.50008 4.74073 5.52118 5.60583 5.79435 5.96646 6.21882 6.24819 6.43570 6.48194 6.61046 6.94792 7.06773 7.28221 7.36502 7.60182 7.85131 7.86580 8.03930 8.11847 8.28721 8.62722 8.88193 8.96541 10.17293 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.085559 B = 0.008012 C = 0.007701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.179925 B = 3493.898984 C = 3634.926059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.110 3.890 10 C -0.227 4.227 11 C -0.085 4.085 12 C -0.216 4.216 13 C -0.052 4.052 14 C 0.079 3.921 15 O -0.583 6.583 16 C -0.095 4.095 17 C -0.166 4.166 18 H 0.281 0.719 19 H 0.092 0.908 20 H 0.087 0.913 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.371 0.629 26 H 0.087 0.913 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.745 -4.247 -3.863 5.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.108 3.892 10 C -0.246 4.246 11 C -0.103 4.103 12 C -0.218 4.218 13 C -0.089 4.089 14 C 0.002 3.998 15 O -0.388 6.388 16 C -0.114 4.114 17 C -0.185 4.185 18 H 0.092 0.908 19 H 0.110 0.890 20 H 0.105 0.895 21 H 0.076 0.924 22 H 0.077 0.923 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.217 0.783 26 H 0.105 0.895 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.198 -3.940 -3.288 5.136 hybrid contribution 0.689 0.741 -0.432 1.100 sum 0.886 -3.199 -3.721 4.986 Atomic orbital electron populations 1.69822 1.07604 1.29335 1.35041 1.25918 0.94718 1.01320 0.92223 0.86365 0.80148 0.80215 0.79977 1.18825 1.20333 1.19007 1.19573 0.98130 0.91332 1.40321 0.90478 1.17628 0.91123 0.92024 0.88449 1.20970 1.03871 0.92885 1.06903 1.20398 0.95479 0.96434 0.98038 1.18900 1.01282 0.92748 1.08846 1.20108 0.98800 0.95210 0.94786 1.22403 0.95293 0.84722 0.97409 1.86471 1.64025 1.41653 1.46628 1.20568 0.98515 0.92728 0.99550 1.21321 0.99363 0.96733 1.01079 0.90795 0.89012 0.89499 0.92372 0.92275 0.93851 0.93924 0.78339 0.89487 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.61 10.95 55.55 0.61 -20.00 15 2 C 0.08 1.92 5.14 -17.34 -0.09 1.83 15 3 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 15 4 H -0.26 -5.36 7.11 56.52 0.40 -4.96 15 5 H -0.28 -5.56 7.11 56.52 0.40 -5.15 15 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 15 7 C -0.46 -12.40 9.05 -37.74 -0.34 -12.74 15 8 H 0.08 1.97 7.91 -52.48 -0.41 1.56 15 9 C 0.11 2.97 5.57 -106.83 -0.60 2.37 15 10 C -0.23 -5.64 9.80 -38.88 -0.38 -6.02 15 11 C -0.09 -1.94 9.67 -39.66 -0.38 -2.32 15 12 C -0.22 -4.80 5.16 -104.33 -0.54 -5.34 15 13 C -0.05 -0.97 5.70 -27.88 -0.16 -1.13 15 14 C 0.08 1.30 7.03 37.16 0.26 1.56 15 15 O -0.58 -8.74 13.66 -35.23 -0.48 -9.22 15 16 C -0.10 -2.25 9.67 -39.66 -0.38 -2.63 15 17 C -0.17 -4.35 8.70 -38.87 -0.34 -4.68 15 18 H 0.28 6.65 8.30 -40.82 -0.34 6.31 15 19 H 0.09 2.15 8.06 -52.48 -0.42 1.72 15 20 H 0.09 1.75 8.06 -52.49 -0.42 1.32 15 21 H 0.06 1.06 8.08 -51.92 -0.42 0.64 15 22 H 0.06 1.10 8.08 -51.93 -0.42 0.68 15 23 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 24 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 25 H 0.37 3.60 9.12 45.56 0.42 4.01 15 26 H 0.09 1.87 8.06 -52.48 -0.42 1.45 15 27 H 0.12 3.17 6.15 -52.48 -0.32 2.85 15 LS Contribution 239.11 15.07 3.60 3.60 Total: -1.00 -28.47 239.11 -6.66 -35.13 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -2.41 Total: 5.98 kcal Atomic # 6 Polarization: -26.16 SS G_CDS: -2.95 Total: -29.11 kcal Atomic # 7 Polarization: -20.61 SS G_CDS: 0.61 Total: -20.00 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.48 Total: -9.22 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.47 -6.66 -35.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143080189.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.131 kcal (2) G-P(sol) polarization free energy of solvation -28.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds