Wall clock time and date at job start Mon Mar 30 2020 02:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 114.00231 * 2 1 4 4 C 1.50695 * 109.47184 * 180.02562 * 3 2 1 5 5 C 1.37649 * 120.12912 * 0.30323 * 4 3 2 6 6 C 1.38616 * 120.24717 * 180.32267 * 5 4 3 7 7 C 1.38661 * 120.50053 * 359.66953 * 6 5 4 8 8 C 1.37602 * 120.24774 * 0.02562 * 7 6 5 9 9 C 1.40698 * 120.12827 * 179.97438 * 4 3 2 10 10 C 1.41390 * 120.24178 * 359.97438 * 9 4 3 11 11 H 1.07998 * 120.00532 * 25.44593 * 10 9 4 12 12 C 1.39947 * 119.99674 * 205.44848 * 10 9 4 13 13 N 1.30826 * 120.00424 * 26.12441 * 12 10 9 14 14 Si 1.86804 * 119.99963 * 206.11571 * 12 10 9 15 15 H 1.48499 * 109.46953 * 180.02562 * 14 12 10 16 16 H 1.48498 * 109.47044 * 300.00192 * 14 12 10 17 17 H 1.48496 * 109.46921 * 60.00314 * 14 12 10 18 18 H 1.09003 * 109.47116 * 59.99599 * 1 2 3 19 19 H 1.08992 * 109.47442 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47100 * 300.00069 * 1 2 3 21 21 H 1.08992 * 109.46996 * 60.00023 * 3 2 1 22 22 H 1.09006 * 109.46823 * 300.00307 * 3 2 1 23 23 H 1.07996 * 119.87503 * 0.02562 * 5 4 3 24 24 H 1.07995 * 119.74596 * 179.69567 * 6 5 4 25 25 H 1.07997 * 119.87168 * 180.02562 * 7 6 5 26 26 H 1.08003 * 120.12151 * 180.02562 * 8 7 6 27 27 H 0.97004 * 119.99443 * 5.87671 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1073 -0.0549 -0.0074 6 6 5.4888 -0.1673 -0.0013 7 6 6.2871 0.9665 0.0049 8 6 5.7143 2.2176 0.0054 9 6 4.3127 2.3438 -0.0013 10 6 3.7129 3.6242 -0.0019 11 1 2.7191 3.7552 0.3999 12 6 4.4071 4.7217 -0.5233 13 7 5.3270 4.5406 -1.4358 14 14 4.0202 6.4456 0.0833 15 1 4.8866 7.4244 -0.6213 16 1 2.5949 6.7589 -0.1919 17 1 4.2710 6.5239 1.5448 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.6887 1.8464 0.8899 22 1 1.6886 1.8464 -0.8900 23 1 3.4952 -0.9446 -0.0127 24 1 5.9469 -1.1453 -0.0017 25 1 7.3625 0.8671 0.0092 26 1 6.3380 3.0993 0.0098 27 1 5.4692 3.6581 -1.8126 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000146449050.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:20 Heat of formation + Delta-G solvation = -59.658782 kcal Electronic energy + Delta-G solvation = -11592.799146 eV Core-core repulsion = 9507.078525 eV Total energy + Delta-G solvation = -2085.720621 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.98854 -38.34130 -35.74824 -32.71533 -31.12996 -28.22119 -26.89415 -26.06831 -22.78596 -21.77351 -19.70042 -17.31685 -17.14986 -16.73273 -16.19182 -15.74516 -15.43278 -14.89729 -14.28115 -13.96422 -13.59603 -13.29518 -12.89391 -12.58085 -12.39683 -12.12446 -11.94417 -11.52446 -11.20587 -10.86430 -10.72365 -9.51059 -9.43327 -9.11387 -6.45885 0.87294 0.94947 1.51316 1.65057 1.80305 2.33627 2.67965 2.92100 3.50104 4.21299 4.39753 4.45087 4.47712 4.54518 4.60661 4.68075 4.78549 4.89550 5.08454 5.25719 5.46707 5.73369 5.80645 5.83668 6.01823 6.21826 6.31368 6.46776 6.79459 6.94920 8.03872 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.031511 B = 0.013879 C = 0.010039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.359233 B = 2016.961155 C = 2788.354281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.145 3.855 4 C -0.226 4.226 5 C -0.067 4.067 6 C -0.252 4.252 7 C -0.091 4.091 8 C -0.241 4.241 9 C 0.077 3.923 10 C -0.554 4.554 11 H 0.077 0.923 12 C 0.005 3.995 13 N -0.817 5.817 14 Si 1.115 2.885 15 H -0.272 1.272 16 H -0.256 1.256 17 H -0.264 1.264 18 H 0.045 0.955 19 H 0.105 0.895 20 H 0.047 0.953 21 H 0.045 0.955 22 H 0.040 0.960 23 H 0.117 0.883 24 H 0.121 0.879 25 H 0.116 0.884 26 H 0.090 0.910 27 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.841 -2.188 2.251 6.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C 0.069 3.931 4 C -0.228 4.228 5 C -0.085 4.085 6 C -0.271 4.271 7 C -0.109 4.109 8 C -0.260 4.260 9 C 0.074 3.926 10 C -0.582 4.582 11 H 0.095 0.905 12 C -0.211 4.211 13 N -0.440 5.440 14 Si 0.932 3.068 15 H -0.197 1.197 16 H -0.180 1.180 17 H -0.189 1.189 18 H 0.063 0.937 19 H 0.124 0.876 20 H 0.066 0.934 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.135 0.865 24 H 0.139 0.861 25 H 0.134 0.866 26 H 0.108 0.892 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.247 -0.794 2.056 5.691 hybrid contribution -0.396 -1.487 -0.027 1.539 sum -5.643 -2.281 2.029 6.416 Atomic orbital electron populations 1.22941 0.79641 1.03953 1.00592 1.87779 1.21381 1.28356 1.95518 1.20656 0.90463 0.83239 0.98724 1.19842 0.93904 0.93675 1.15354 1.20693 0.94546 0.96406 0.96876 1.20795 0.93535 0.97661 1.15067 1.20958 0.98926 0.92713 0.98331 1.21113 0.94753 0.96485 1.13657 1.17724 0.92043 0.93043 0.89772 1.20700 1.04662 0.93818 1.38985 0.90528 1.28412 0.91093 1.09639 0.91976 1.70567 1.27138 1.28314 1.17951 0.83043 0.77975 0.68753 0.77073 1.19699 1.18000 1.18914 0.93667 0.87630 0.93413 0.93753 0.94158 0.86539 0.86112 0.86623 0.89206 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 11.01 113.37 1.25 1.92 15 2 O -0.41 -15.84 9.19 -148.98 -1.37 -17.21 15 3 C 0.15 6.33 5.13 71.23 0.37 6.69 15 4 C -0.23 -11.40 5.94 -19.40 -0.12 -11.51 15 5 C -0.07 -3.15 9.37 22.22 0.21 -2.94 15 6 C -0.25 -11.29 10.05 22.46 0.23 -11.06 15 7 C -0.09 -4.29 10.02 22.22 0.22 -4.07 15 8 C -0.24 -12.81 7.98 22.73 0.18 -12.63 15 9 C 0.08 4.18 5.28 -21.29 -0.11 4.07 15 10 C -0.55 -29.66 8.42 23.46 0.20 -29.47 15 11 H 0.08 3.94 7.08 -2.91 -0.02 3.92 15 12 C 0.01 0.26 4.92 85.26 0.42 0.68 15 13 N -0.82 -44.54 12.33 21.83 0.27 -44.27 15 14 Si 1.11 42.91 30.00 68.60 2.06 44.96 15 15 H -0.27 -10.34 7.11 99.48 0.71 -9.63 15 16 H -0.26 -8.94 7.11 99.48 0.71 -8.23 15 17 H -0.26 -9.68 7.11 99.48 0.71 -8.97 15 18 H 0.04 1.14 8.14 -2.39 -0.02 1.12 15 19 H 0.11 2.27 8.14 -2.39 -0.02 2.25 15 20 H 0.05 1.18 8.14 -2.39 -0.02 1.16 15 21 H 0.04 1.89 7.80 -2.39 -0.02 1.87 15 22 H 0.04 1.78 8.14 -2.38 -0.02 1.77 15 23 H 0.12 5.02 7.00 -2.91 -0.02 5.00 15 24 H 0.12 4.59 8.06 -2.91 -0.02 4.57 15 25 H 0.12 4.72 8.06 -2.91 -0.02 4.69 15 26 H 0.09 4.96 6.55 -2.91 -0.02 4.94 15 27 H 0.28 16.14 6.77 -92.70 -0.63 15.52 15 Total: -1.00 -59.94 234.84 5.09 -54.86 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 1.29 Total: 19.98 kcal Atomic # 6 Polarization: -61.15 SS G_CDS: 2.84 Total: -58.31 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.27 Total: -44.27 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -1.37 Total: -17.21 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.06 Total: 44.96 kcal Total: -59.94 5.09 -54.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000146449050.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.804 kcal (2) G-P(sol) polarization free energy of solvation -59.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds