Wall clock time and date at job start Mon Mar 30 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46894 * 111.00196 * 2 1 4 4 C 1.50699 * 109.47263 * 179.97438 * 3 2 1 5 5 C 1.38641 * 119.74960 * 269.72855 * 4 3 2 6 6 C 1.37616 * 120.24503 * 179.72132 * 5 4 3 7 7 C 1.40719 * 119.74729 * 0.56761 * 6 5 4 8 8 C 1.41395 * 120.24363 * 179.68606 * 7 6 5 9 9 H 1.08000 * 119.99814 * 204.41214 * 8 7 6 10 10 C 1.39952 * 120.00228 * 24.40570 * 8 7 6 11 11 N 1.30822 * 119.99612 * 17.84604 * 10 8 7 12 12 Si 1.86794 * 119.99875 * 197.84974 * 10 8 7 13 13 H 1.48496 * 109.47494 * 60.00206 * 12 10 8 14 14 H 1.48503 * 109.47158 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47130 * 300.00124 * 12 10 8 16 16 C 1.40709 * 119.51013 * 359.70551 * 7 6 5 17 17 C 1.37614 * 119.74723 * 359.97438 * 16 7 6 18 18 H 1.08994 * 109.47662 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.47366 * 300.00485 * 1 2 3 20 20 H 1.09002 * 109.47327 * 59.99639 * 1 2 3 21 21 H 1.00897 * 110.99957 * 236.04315 * 2 1 3 22 22 H 1.08997 * 109.47516 * 300.00072 * 3 2 1 23 23 H 1.09003 * 109.47520 * 59.99965 * 3 2 1 24 24 H 1.07994 * 119.87586 * 359.97438 * 5 4 3 25 25 H 1.07999 * 120.12670 * 180.27894 * 6 5 4 26 26 H 0.97000 * 119.99344 * 179.97438 * 11 10 8 27 27 H 1.08001 * 120.12685 * 179.97438 * 16 7 6 28 28 H 1.07999 * 119.88116 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3311 0.0006 5 6 4.1892 1.3187 1.2046 6 6 5.5647 1.2762 1.2171 7 6 6.2737 1.2575 0.0018 8 6 7.6872 1.2206 0.0024 9 1 8.2374 1.5928 -0.8491 10 6 8.3732 0.7019 1.1064 11 7 7.7459 -0.0549 1.9697 12 14 10.1844 1.0904 1.3474 13 1 10.3634 2.5592 1.4716 14 1 10.6732 0.4255 2.5820 15 1 10.9565 0.5945 0.1799 16 6 5.5657 1.2762 -1.2141 17 6 4.1901 1.3120 -1.2027 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 1.8305 -0.5261 -0.7813 22 1 1.6460 1.8948 -0.8899 23 1 1.6459 1.8948 0.8900 24 1 3.6431 1.3382 2.1361 25 1 6.0980 1.2620 2.1561 26 1 8.2215 -0.4147 2.7347 27 1 6.0998 1.2626 -2.1527 28 1 3.6445 1.3268 -2.1346 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000201180900.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:53 Heat of formation + Delta-G solvation = 8.400016 kcal Electronic energy + Delta-G solvation = -11191.048092 eV Core-core repulsion = 9205.997384 eV Total energy + Delta-G solvation = -1985.050708 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.74435 -35.41953 -33.48438 -30.29295 -29.21982 -27.03928 -24.41851 -22.56218 -20.91728 -19.85122 -17.26444 -15.62809 -15.29056 -14.32868 -14.06596 -13.84802 -13.33516 -12.98885 -12.34618 -11.89828 -11.70396 -11.56469 -11.38903 -11.02590 -10.87658 -10.45511 -10.36881 -9.56867 -9.33603 -9.09612 -8.02310 -7.40851 -7.27273 -6.72943 -4.32218 2.78671 3.07815 3.10449 3.11303 3.21908 3.94946 4.55004 4.95487 5.52003 5.61776 5.76197 5.91742 5.96061 6.03358 6.28279 6.39331 6.48371 6.99139 7.10094 7.33055 7.39501 7.45308 7.64886 7.76533 7.93388 8.08695 8.18856 8.33465 8.67856 8.92525 9.01448 10.21409 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.083446 B = 0.008317 C = 0.007886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.466351 B = 3365.942824 C = 3549.626109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.692 5.692 3 C 0.123 3.877 4 C -0.215 4.215 5 C -0.080 4.080 6 C -0.168 4.168 7 C 0.112 3.888 8 C -0.465 4.465 9 H 0.076 0.924 10 C 0.076 3.924 11 N -0.791 5.791 12 Si 0.908 3.092 13 H -0.264 1.264 14 H -0.278 1.278 15 H -0.266 1.266 16 C -0.228 4.228 17 C -0.086 4.086 18 H 0.060 0.940 19 H 0.059 0.941 20 H 0.013 0.987 21 H 0.340 0.660 22 H 0.017 0.983 23 H 0.061 0.939 24 H 0.087 0.913 25 H 0.117 0.883 26 H 0.281 0.719 27 H 0.090 0.910 28 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.318 1.090 -1.450 5.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.322 5.322 3 C -0.005 4.005 4 C -0.217 4.217 5 C -0.099 4.099 6 C -0.187 4.187 7 C 0.110 3.890 8 C -0.494 4.494 9 H 0.095 0.905 10 C -0.142 4.142 11 N -0.417 5.417 12 Si 0.732 3.268 13 H -0.188 1.188 14 H -0.203 1.203 15 H -0.190 1.190 16 C -0.248 4.248 17 C -0.105 4.105 18 H 0.079 0.921 19 H 0.078 0.922 20 H 0.031 0.969 21 H 0.158 0.842 22 H 0.036 0.964 23 H 0.080 0.920 24 H 0.105 0.895 25 H 0.135 0.865 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.246 0.874 -0.544 5.346 hybrid contribution 0.612 0.278 -0.767 1.020 sum -4.634 1.153 -1.311 4.952 Atomic orbital electron populations 1.22177 0.89377 1.01021 0.99676 1.60549 1.05958 1.15536 1.50189 1.20595 0.93204 0.87996 0.98698 1.18932 0.92240 1.16921 0.93564 1.20509 0.94432 0.99599 0.95312 1.21319 0.92405 1.06289 0.98715 1.17617 0.93213 0.87297 0.90892 1.19568 0.91612 1.36270 1.01983 0.90542 1.25911 1.00805 0.92585 0.94873 1.69831 1.38652 1.22231 1.10936 0.86380 0.82106 0.79866 0.78423 1.18847 1.20345 1.19047 1.20927 0.93098 1.13777 0.96973 1.20355 0.94289 1.00678 0.95133 0.92103 0.92231 0.96851 0.84211 0.96441 0.92041 0.89463 0.86481 0.90822 0.89145 0.89936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.70 60.06 0.64 1.01 15 2 N -0.69 -11.93 6.84 -122.43 -0.84 -12.77 15 3 C 0.12 2.27 5.80 -4.98 -0.03 2.24 15 4 C -0.21 -4.81 5.42 -104.33 -0.56 -5.37 15 5 C -0.08 -1.92 9.67 -39.66 -0.38 -2.31 15 6 C -0.17 -4.47 8.70 -38.87 -0.34 -4.81 15 7 C 0.11 3.06 5.57 -106.83 -0.60 2.46 15 8 C -0.46 -12.54 9.05 -37.74 -0.34 -12.88 15 9 H 0.08 1.97 7.91 -52.49 -0.41 1.56 15 10 C 0.08 1.94 5.14 -17.34 -0.09 1.85 15 11 N -0.79 -20.82 10.95 55.55 0.61 -20.21 15 12 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 15 13 H -0.26 -5.43 7.11 56.52 0.40 -5.03 15 14 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 15 H -0.27 -5.44 7.11 56.52 0.40 -5.04 15 16 C -0.23 -5.71 9.80 -38.88 -0.38 -6.10 15 17 C -0.09 -1.95 9.67 -39.66 -0.38 -2.33 15 18 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 19 H 0.06 0.77 8.14 -51.93 -0.42 0.35 15 20 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 15 21 H 0.34 5.76 8.81 -39.29 -0.35 5.41 15 22 H 0.02 0.30 8.08 -51.93 -0.42 -0.12 15 23 H 0.06 1.10 8.08 -51.93 -0.42 0.68 15 24 H 0.09 1.95 8.06 -52.49 -0.42 1.53 15 25 H 0.12 3.21 6.16 -52.49 -0.32 2.89 15 26 H 0.28 6.73 8.30 -40.82 -0.34 6.39 15 27 H 0.09 2.13 8.06 -52.49 -0.42 1.71 15 28 H 0.08 1.65 8.06 -52.49 -0.42 1.23 15 LS Contribution 244.15 15.07 3.68 3.68 Total: -1.00 -27.68 244.15 -7.64 -35.32 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -3.59 Total: 6.39 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -2.46 Total: -26.23 kcal Atomic # 7 Polarization: -32.75 SS G_CDS: -0.23 Total: -32.98 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -27.68 -7.64 -35.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201180900.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.724 kcal (2) G-P(sol) polarization free energy of solvation -27.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds