Wall clock time and date at job start Mon Mar 30 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46894 * 111.00196 * 2 1 4 4 C 1.50699 * 109.47263 * 179.97438 * 3 2 1 5 5 C 1.38641 * 119.74960 * 269.72855 * 4 3 2 6 6 C 1.37616 * 120.24503 * 179.72132 * 5 4 3 7 7 C 1.40719 * 119.74729 * 0.56761 * 6 5 4 8 8 C 1.41395 * 120.24363 * 179.68606 * 7 6 5 9 9 H 1.08000 * 119.99814 * 204.41214 * 8 7 6 10 10 C 1.39952 * 120.00228 * 24.40570 * 8 7 6 11 11 N 1.30822 * 119.99612 * 17.84604 * 10 8 7 12 12 Si 1.86794 * 119.99875 * 197.84974 * 10 8 7 13 13 H 1.48496 * 109.47494 * 60.00206 * 12 10 8 14 14 H 1.48503 * 109.47158 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47130 * 300.00124 * 12 10 8 16 16 C 1.40709 * 119.51013 * 359.70551 * 7 6 5 17 17 C 1.37614 * 119.74723 * 359.97438 * 16 7 6 18 18 H 1.08994 * 109.47662 * 180.02562 * 1 2 3 19 19 H 1.09004 * 109.47366 * 300.00485 * 1 2 3 20 20 H 1.09002 * 109.47327 * 59.99639 * 1 2 3 21 21 H 1.00897 * 110.99957 * 236.04315 * 2 1 3 22 22 H 1.08997 * 109.47516 * 300.00072 * 3 2 1 23 23 H 1.09003 * 109.47520 * 59.99965 * 3 2 1 24 24 H 1.07994 * 119.87586 * 359.97438 * 5 4 3 25 25 H 1.07999 * 120.12670 * 180.27894 * 6 5 4 26 26 H 0.97000 * 119.99344 * 179.97438 * 11 10 8 27 27 H 1.08001 * 120.12685 * 179.97438 * 16 7 6 28 28 H 1.07999 * 119.88116 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3311 0.0006 5 6 4.1892 1.3187 1.2046 6 6 5.5647 1.2762 1.2171 7 6 6.2737 1.2575 0.0018 8 6 7.6872 1.2206 0.0024 9 1 8.2374 1.5928 -0.8491 10 6 8.3732 0.7019 1.1064 11 7 7.7459 -0.0549 1.9697 12 14 10.1844 1.0904 1.3474 13 1 10.3634 2.5592 1.4716 14 1 10.6732 0.4255 2.5820 15 1 10.9565 0.5945 0.1799 16 6 5.5657 1.2762 -1.2141 17 6 4.1901 1.3120 -1.2027 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3634 0.5139 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 1.8305 -0.5261 -0.7813 22 1 1.6460 1.8948 -0.8899 23 1 1.6459 1.8948 0.8900 24 1 3.6431 1.3382 2.1361 25 1 6.0980 1.2620 2.1561 26 1 8.2215 -0.4147 2.7347 27 1 6.0998 1.2626 -2.1527 28 1 3.6445 1.3268 -2.1346 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000201180900.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:53 Heat of formation + Delta-G solvation = -8.733326 kcal Electronic energy + Delta-G solvation = -11191.791050 eV Core-core repulsion = 9205.997384 eV Total energy + Delta-G solvation = -1985.793666 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.57451 -36.92199 -35.29242 -32.07972 -31.13158 -28.69380 -25.99403 -24.04974 -22.83308 -21.66628 -19.21053 -17.23527 -16.98307 -15.90767 -15.66878 -15.38080 -15.08214 -14.53039 -14.00591 -13.78093 -13.36694 -13.06173 -12.81303 -12.68308 -12.48347 -12.26790 -12.05422 -11.40885 -11.22540 -10.99186 -9.38257 -9.34296 -9.12829 -8.62408 -6.32718 0.96445 1.15824 1.38157 1.49596 1.54110 2.21390 2.70810 3.53040 3.85840 4.27446 4.32750 4.52593 4.59615 4.65157 4.74598 4.83269 5.03716 5.07576 5.16915 5.39452 5.47676 5.72326 5.94872 6.10821 6.16996 6.29302 6.40078 6.53230 6.72062 6.95186 7.05540 8.34392 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.083446 B = 0.008317 C = 0.007886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 335.466351 B = 3365.942824 C = 3549.626109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.709 5.709 3 C 0.129 3.871 4 C -0.205 4.205 5 C -0.088 4.088 6 C -0.193 4.193 7 C 0.079 3.921 8 C -0.505 4.505 9 H 0.075 0.925 10 C 0.034 3.966 11 N -0.826 5.826 12 Si 0.983 3.017 13 H -0.261 1.261 14 H -0.267 1.267 15 H -0.259 1.259 16 C -0.244 4.244 17 C -0.085 4.085 18 H 0.076 0.924 19 H 0.064 0.936 20 H 0.028 0.972 21 H 0.341 0.659 22 H 0.036 0.964 23 H 0.068 0.932 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.288 0.712 27 H 0.097 0.903 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.272 1.208 -1.909 6.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.340 5.340 3 C 0.001 3.999 4 C -0.206 4.206 5 C -0.107 4.107 6 C -0.213 4.213 7 C 0.077 3.923 8 C -0.534 4.534 9 H 0.093 0.907 10 C -0.180 4.180 11 N -0.452 5.452 12 Si 0.804 3.196 13 H -0.185 1.185 14 H -0.192 1.192 15 H -0.183 1.183 16 C -0.264 4.264 17 C -0.103 4.103 18 H 0.095 0.905 19 H 0.082 0.918 20 H 0.046 0.954 21 H 0.159 0.841 22 H 0.054 0.946 23 H 0.086 0.914 24 H 0.119 0.881 25 H 0.117 0.883 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.227 0.989 -1.011 6.386 hybrid contribution 0.726 0.226 -0.662 1.008 sum -5.501 1.215 -1.672 5.877 Atomic orbital electron populations 1.22242 0.86803 1.02427 1.00581 1.60463 1.08436 1.14541 1.50591 1.20516 0.90208 0.89241 0.99966 1.19387 0.94732 1.13901 0.92586 1.20751 0.93706 0.99290 0.96935 1.21288 0.93594 1.08372 0.98007 1.17974 0.93985 0.88485 0.91897 1.19838 0.92152 1.38163 1.03255 0.90660 1.26784 1.05580 0.91677 0.93988 1.69890 1.40736 1.22975 1.11573 0.85242 0.75954 0.79644 0.78786 1.18495 1.19150 1.18305 1.21165 0.94442 1.14192 0.96604 1.20699 0.93559 0.99278 0.96813 0.90549 0.91752 0.95388 0.84147 0.94591 0.91376 0.88105 0.88330 0.90155 0.88510 0.86594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.70 127.69 1.37 2.04 15 2 N -0.71 -22.38 6.84 -541.27 -3.70 -26.09 15 3 C 0.13 4.37 5.80 85.56 0.50 4.87 15 4 C -0.20 -8.81 5.42 -19.67 -0.11 -8.92 15 5 C -0.09 -4.24 9.67 22.22 0.21 -4.03 15 6 C -0.19 -10.58 8.70 22.73 0.20 -10.39 15 7 C 0.08 4.41 5.57 -21.29 -0.12 4.29 15 8 C -0.50 -28.08 9.05 23.46 0.21 -27.86 15 9 H 0.08 4.02 7.91 -2.91 -0.02 4.00 15 10 C 0.03 1.79 5.14 85.26 0.44 2.23 15 11 N -0.83 -44.61 10.95 21.83 0.24 -44.37 15 12 Si 0.98 39.01 29.59 68.60 2.03 41.04 15 13 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 14 H -0.27 -10.00 7.11 99.48 0.71 -9.29 15 15 H -0.26 -9.89 7.11 99.48 0.71 -9.19 15 16 C -0.24 -12.30 9.80 22.73 0.22 -12.08 15 17 C -0.08 -3.73 9.67 22.22 0.21 -3.51 15 18 H 0.08 1.56 8.14 -2.39 -0.02 1.54 15 19 H 0.06 1.45 8.14 -2.39 -0.02 1.43 15 20 H 0.03 0.58 8.14 -2.39 -0.02 0.56 15 21 H 0.34 10.60 8.81 -89.70 -0.79 9.81 15 22 H 0.04 1.10 8.08 -2.39 -0.02 1.08 15 23 H 0.07 2.23 8.08 -2.39 -0.02 2.21 15 24 H 0.10 4.47 8.06 -2.91 -0.02 4.45 15 25 H 0.10 5.66 6.16 -2.91 -0.02 5.64 15 26 H 0.29 14.06 8.30 -92.71 -0.77 13.29 15 27 H 0.10 4.60 8.06 -2.91 -0.02 4.57 15 28 H 0.12 4.27 8.06 -2.91 -0.02 4.25 15 Total: -1.00 -59.88 244.15 2.06 -57.82 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.35 Total: 24.95 kcal Atomic # 6 Polarization: -56.50 SS G_CDS: 3.14 Total: -53.36 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: -3.47 Total: -70.45 kcal Atomic # 14 Polarization: 39.01 SS G_CDS: 2.03 Total: 41.04 kcal Total: -59.88 2.06 -57.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201180900.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.087 kcal (2) G-P(sol) polarization free energy of solvation -59.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds