Wall clock time and date at job start Mon Mar 30 2020 01:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.84261 * 2 1 4 4 C 1.54421 * 110.95623 * 123.75332 * 2 1 3 5 5 C 1.51611 * 105.02593 * 92.52138 * 4 2 1 6 6 N 1.37272 * 140.90847 * 196.90438 * 5 4 2 7 7 H 0.96998 * 124.71901 * 0.04845 * 6 5 4 8 8 C 1.34761 * 110.55512 * 180.02562 * 6 5 4 9 9 C 1.39192 * 107.93619 * 359.97438 * 8 6 5 10 10 C 1.41353 * 127.13892 * 179.97438 * 9 8 6 11 11 H 1.08007 * 119.99635 * 198.53926 * 10 9 8 12 12 C 1.39674 * 120.00120 * 18.53399 * 10 9 8 13 13 N 1.31053 * 119.99915 * 23.50904 * 12 10 9 14 14 Si 1.86798 * 119.99790 * 203.50239 * 12 10 9 15 15 H 1.48499 * 109.47384 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47160 * 120.00403 * 14 12 10 17 17 H 1.48500 * 109.47051 * 240.00213 * 14 12 10 18 18 C 1.34117 * 110.11307 * 17.23836 * 5 4 2 19 19 C 1.51146 * 110.74304 * 359.46885 * 18 5 4 20 20 H 1.08996 * 109.47098 * 297.69671 * 1 2 3 21 21 H 1.09003 * 109.47017 * 57.70362 * 1 2 3 22 22 H 1.09002 * 109.46771 * 177.69948 * 1 2 3 23 23 H 1.09005 * 110.33280 * 333.63079 * 4 2 1 24 24 H 1.09001 * 110.41613 * 211.44963 * 4 2 1 25 25 H 1.08003 * 126.02943 * 180.02562 * 8 6 5 26 26 H 0.96994 * 120.00647 * 5.71922 * 13 12 10 27 27 H 1.08998 * 110.53310 * 224.64617 * 19 18 5 28 28 H 1.09004 * 110.20957 * 102.44343 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9178 1.0187 0.0000 4 6 2.0823 -0.8012 1.1990 5 6 2.2830 -2.2087 0.6722 6 7 2.4665 -3.4954 1.1137 7 1 2.5035 -3.7595 2.0463 8 6 2.5877 -4.3406 0.0711 9 6 2.4812 -3.5952 -1.0996 10 6 2.5508 -4.0763 -2.4269 11 1 2.7536 -3.3935 -3.2388 12 6 2.3574 -5.4346 -2.6885 13 7 1.6802 -6.1745 -1.8449 14 14 3.0638 -6.1966 -4.2408 15 1 3.7810 -5.1563 -5.0208 16 1 4.0107 -7.2801 -3.8737 17 1 1.9617 -6.7595 -5.0617 18 6 2.2896 -2.2026 -0.6689 19 6 2.0825 -0.8023 -1.1989 20 1 -0.3633 0.4776 0.9099 21 1 -0.3633 0.5491 -0.8687 22 1 -0.3633 -1.0269 -0.0413 23 1 1.3626 -0.8023 2.0176 24 1 3.0321 -0.3822 1.5312 25 1 2.7397 -5.4081 0.1330 26 1 1.2432 -5.7642 -1.0824 27 1 1.3623 -0.8058 -2.0170 28 1 3.0313 -0.3815 -1.5319 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213800027.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:31 Heat of formation + Delta-G solvation = 30.500687 kcal Electronic energy + Delta-G solvation = -11650.036408 eV Core-core repulsion = 9665.944057 eV Total energy + Delta-G solvation = -1984.092351 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.76873 -35.93876 -33.39745 -29.59488 -28.53803 -26.51008 -24.64083 -24.14233 -19.59715 -19.40315 -17.57697 -16.90933 -15.47542 -14.68438 -13.85957 -13.42948 -13.16528 -12.70645 -12.32963 -11.80683 -11.72694 -11.36819 -10.98341 -10.87734 -10.47094 -10.25968 -10.22074 -10.16591 -9.84045 -9.40167 -8.62080 -7.14106 -6.73791 -6.54393 -3.83716 3.33421 3.37587 3.56275 3.62411 4.33225 4.35521 4.43229 5.24109 5.35198 5.44090 5.59471 5.90964 5.95843 6.06172 6.20870 6.29321 6.44221 6.51612 6.60367 6.75512 6.88875 7.06002 7.55447 7.66019 8.05513 8.29587 8.54323 8.73377 9.05077 9.30788 9.46343 10.62403 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.055015 B = 0.011126 C = 0.010065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.825467 B = 2516.049329 C = 2781.267006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.024 4.024 5 C -0.041 4.041 6 N -0.552 5.552 7 H 0.385 0.615 8 C -0.163 4.163 9 C 0.054 3.946 10 C -0.521 4.521 11 H 0.062 0.938 12 C 0.034 3.966 13 N -0.849 5.849 14 Si 1.067 2.933 15 H -0.282 1.282 16 H -0.281 1.281 17 H -0.285 1.285 18 C -0.235 4.235 19 C -0.031 4.031 20 H 0.047 0.953 21 H 0.052 0.948 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.148 0.852 26 H 0.292 0.708 27 H 0.055 0.945 28 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.234 7.678 3.690 8.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.108 4.108 3 H 0.091 0.909 4 C -0.063 4.063 5 C -0.154 4.154 6 N -0.148 5.148 7 H 0.216 0.784 8 C -0.288 4.288 9 C 0.048 3.952 10 C -0.554 4.554 11 H 0.080 0.920 12 C -0.181 4.181 13 N -0.478 5.478 14 Si 0.893 3.107 15 H -0.207 1.207 16 H -0.207 1.207 17 H -0.211 1.211 18 C -0.246 4.246 19 C -0.069 4.069 20 H 0.066 0.934 21 H 0.071 0.929 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.165 0.835 26 H 0.105 0.895 27 H 0.074 0.926 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.063 6.127 2.985 6.815 hybrid contribution -0.123 1.145 1.333 1.761 sum -0.187 7.272 4.318 8.459 Atomic orbital electron populations 1.21734 0.95016 1.02242 1.00489 1.21851 0.95595 0.97772 0.95574 0.90939 1.20505 0.99481 0.89323 0.96959 1.20510 1.13088 0.86327 0.95437 1.40392 1.62675 1.04784 1.06982 0.78351 1.21656 1.26892 0.94769 0.85507 1.17980 0.97068 0.87844 0.92278 1.19644 1.47877 0.95441 0.92419 0.91980 1.26553 0.94027 0.94311 1.03198 1.70465 1.22660 1.40485 1.14197 0.83643 0.76681 0.75787 0.74589 1.20749 1.20707 1.21120 1.21220 1.15794 0.94250 0.93320 1.20236 0.98902 0.91800 0.95933 0.93422 0.92928 0.92143 0.92790 0.92061 0.83482 0.89509 0.92639 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.12 37.16 0.34 -1.74 15 2 C -0.09 -1.46 3.71 -89.10 -0.33 -1.79 15 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 15 4 C -0.02 -0.42 6.34 -26.69 -0.17 -0.59 15 5 C -0.04 -0.92 8.01 -81.16 -0.65 -1.57 15 6 N -0.55 -12.52 5.92 -8.13 -0.05 -12.56 15 7 H 0.38 7.19 8.96 -40.82 -0.37 6.82 15 8 C -0.16 -4.33 10.04 -15.91 -0.16 -4.49 15 9 C 0.05 1.55 5.76 -104.80 -0.60 0.95 15 10 C -0.52 -15.35 9.35 -37.86 -0.35 -15.70 15 11 H 0.06 1.82 7.94 -52.48 -0.42 1.40 15 12 C 0.03 0.95 5.28 -17.35 -0.09 0.86 15 13 N -0.85 -24.75 12.68 55.53 0.70 -24.04 15 14 Si 1.07 24.18 29.99 -169.99 -5.10 19.08 15 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 17 H -0.28 -6.27 7.11 56.52 0.40 -5.86 15 18 C -0.24 -5.90 7.13 -102.29 -0.73 -6.63 15 19 C -0.03 -0.63 6.34 -26.89 -0.17 -0.80 15 20 H 0.05 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15 22 H 0.06 1.07 8.14 -51.93 -0.42 0.64 15 23 H 0.05 0.84 7.91 -51.93 -0.41 0.42 15 24 H 0.06 0.97 8.14 -51.93 -0.42 0.54 15 25 H 0.15 3.98 6.89 -52.48 -0.36 3.62 15 26 H 0.29 8.64 6.25 -40.82 -0.26 8.39 15 27 H 0.05 1.14 7.91 -51.93 -0.41 0.73 15 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 LS Contribution 235.71 15.07 3.55 3.55 Total: -1.00 -31.32 235.71 -7.36 -38.68 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -3.55 Total: 6.81 kcal Atomic # 6 Polarization: -28.59 SS G_CDS: -2.92 Total: -31.51 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.66 Total: -36.61 kcal Atomic # 14 Polarization: 24.18 SS G_CDS: -5.10 Total: 19.08 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -31.32 -7.36 -38.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213800027.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.178 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds