Wall clock time and date at job start Mon Mar 30 2020 01:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 110.84261 * 2 1 4 4 C 1.54421 * 110.95623 * 123.75332 * 2 1 3 5 5 C 1.51611 * 105.02593 * 92.52138 * 4 2 1 6 6 N 1.37272 * 140.90847 * 196.90438 * 5 4 2 7 7 H 0.96998 * 124.71901 * 0.04845 * 6 5 4 8 8 C 1.34761 * 110.55512 * 180.02562 * 6 5 4 9 9 C 1.39192 * 107.93619 * 359.97438 * 8 6 5 10 10 C 1.41353 * 127.13892 * 179.97438 * 9 8 6 11 11 H 1.08007 * 119.99635 * 198.53926 * 10 9 8 12 12 C 1.39674 * 120.00120 * 18.53399 * 10 9 8 13 13 N 1.31053 * 119.99915 * 23.50904 * 12 10 9 14 14 Si 1.86798 * 119.99790 * 203.50239 * 12 10 9 15 15 H 1.48499 * 109.47384 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47160 * 120.00403 * 14 12 10 17 17 H 1.48500 * 109.47051 * 240.00213 * 14 12 10 18 18 C 1.34117 * 110.11307 * 17.23836 * 5 4 2 19 19 C 1.51146 * 110.74304 * 359.46885 * 18 5 4 20 20 H 1.08996 * 109.47098 * 297.69671 * 1 2 3 21 21 H 1.09003 * 109.47017 * 57.70362 * 1 2 3 22 22 H 1.09002 * 109.46771 * 177.69948 * 1 2 3 23 23 H 1.09005 * 110.33280 * 333.63079 * 4 2 1 24 24 H 1.09001 * 110.41613 * 211.44963 * 4 2 1 25 25 H 1.08003 * 126.02943 * 180.02562 * 8 6 5 26 26 H 0.96994 * 120.00647 * 5.71922 * 13 12 10 27 27 H 1.08998 * 110.53310 * 224.64617 * 19 18 5 28 28 H 1.09004 * 110.20957 * 102.44343 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9178 1.0187 0.0000 4 6 2.0823 -0.8012 1.1990 5 6 2.2830 -2.2087 0.6722 6 7 2.4665 -3.4954 1.1137 7 1 2.5035 -3.7595 2.0463 8 6 2.5877 -4.3406 0.0711 9 6 2.4812 -3.5952 -1.0996 10 6 2.5508 -4.0763 -2.4269 11 1 2.7536 -3.3935 -3.2388 12 6 2.3574 -5.4346 -2.6885 13 7 1.6802 -6.1745 -1.8449 14 14 3.0638 -6.1966 -4.2408 15 1 3.7810 -5.1563 -5.0208 16 1 4.0107 -7.2801 -3.8737 17 1 1.9617 -6.7595 -5.0617 18 6 2.2896 -2.2026 -0.6689 19 6 2.0825 -0.8023 -1.1989 20 1 -0.3633 0.4776 0.9099 21 1 -0.3633 0.5491 -0.8687 22 1 -0.3633 -1.0269 -0.0413 23 1 1.3626 -0.8023 2.0176 24 1 3.0321 -0.3822 1.5312 25 1 2.7397 -5.4081 0.1330 26 1 1.2432 -5.7642 -1.0824 27 1 1.3623 -0.8058 -2.0170 28 1 3.0313 -0.3815 -1.5319 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213800027.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:31 Heat of formation + Delta-G solvation = 11.158879 kcal Electronic energy + Delta-G solvation = -11650.875132 eV Core-core repulsion = 9665.944057 eV Total energy + Delta-G solvation = -1984.931075 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.58461 -37.52668 -35.49198 -31.40914 -30.14085 -28.20711 -26.50263 -25.95370 -21.47530 -21.04260 -19.42156 -18.79557 -17.42251 -16.13340 -15.70606 -15.11923 -14.64261 -14.49177 -14.07365 -13.59737 -13.55585 -12.80558 -12.69332 -12.57724 -12.06698 -11.94936 -11.76292 -11.60101 -11.53632 -11.42866 -10.70003 -9.20139 -8.93341 -8.46319 -6.04834 1.48633 1.51557 1.77336 1.81510 2.29221 2.46220 2.67224 3.41860 3.82675 3.95477 4.14327 4.50639 4.56239 4.74479 4.79728 4.91779 4.98099 5.07976 5.17543 5.21055 5.32661 5.49801 5.60159 5.71880 5.92767 6.15164 6.43363 6.71238 7.04413 7.30082 7.39857 8.38494 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.055015 B = 0.011126 C = 0.010065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.825467 B = 2516.049329 C = 2781.267006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.077 4.077 3 H 0.114 0.886 4 C -0.021 4.021 5 C -0.022 4.022 6 N -0.546 5.546 7 H 0.405 0.595 8 C -0.171 4.171 9 C 0.002 3.998 10 C -0.556 4.556 11 H 0.047 0.953 12 C -0.008 4.008 13 N -0.867 5.867 14 Si 1.121 2.879 15 H -0.271 1.271 16 H -0.269 1.269 17 H -0.271 1.271 18 C -0.283 4.283 19 C -0.034 4.034 20 H 0.079 0.921 21 H 0.064 0.936 22 H 0.024 0.976 23 H 0.082 0.918 24 H 0.088 0.912 25 H 0.133 0.867 26 H 0.276 0.724 27 H 0.041 0.959 28 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.106 9.566 4.615 10.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 H 0.132 0.868 4 C -0.059 4.059 5 C -0.136 4.136 6 N -0.143 5.143 7 H 0.240 0.760 8 C -0.297 4.297 9 C -0.004 4.004 10 C -0.589 4.589 11 H 0.066 0.934 12 C -0.217 4.217 13 N -0.496 5.496 14 Si 0.940 3.060 15 H -0.196 1.196 16 H -0.194 1.194 17 H -0.196 1.196 18 C -0.292 4.292 19 C -0.072 4.072 20 H 0.098 0.902 21 H 0.083 0.917 22 H 0.043 0.957 23 H 0.101 0.899 24 H 0.106 0.894 25 H 0.151 0.849 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.058 8.031 3.952 8.951 hybrid contribution -0.178 0.638 1.139 1.318 sum -0.120 8.669 5.091 10.054 Atomic orbital electron populations 1.21738 0.94234 1.00566 1.02768 1.21921 0.96204 0.98898 0.92507 0.86808 1.20756 1.01788 0.85326 0.98014 1.21482 1.09081 0.87784 0.95216 1.40342 1.61856 1.04776 1.07375 0.75963 1.21435 1.27241 0.94538 0.86526 1.18509 0.98557 0.90673 0.92693 1.19864 1.49853 0.96325 0.92892 0.93418 1.28082 0.93223 0.94631 1.05784 1.70591 1.24134 1.40321 1.14593 0.82956 0.76586 0.75481 0.70952 1.19599 1.19449 1.19627 1.21801 1.17217 0.94892 0.95325 1.20379 0.99154 0.90107 0.97585 0.90223 0.91745 0.95661 0.89931 0.89355 0.84926 0.91218 0.93982 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.12 71.98 0.66 -3.00 15 2 C -0.08 -2.21 3.71 -9.81 -0.04 -2.24 15 3 H 0.11 2.45 8.14 -2.39 -0.02 2.43 15 4 C -0.02 -0.63 6.34 30.62 0.19 -0.43 15 5 C -0.02 -0.95 8.01 41.06 0.33 -0.63 15 6 N -0.55 -24.52 5.92 -179.62 -1.06 -25.59 15 7 H 0.41 14.64 8.96 -92.71 -0.83 13.80 15 8 C -0.17 -9.41 10.04 84.47 0.85 -8.56 15 9 C 0.00 0.12 5.76 -19.98 -0.11 0.01 15 10 C -0.56 -34.34 9.35 23.38 0.22 -34.12 15 11 H 0.05 2.95 7.94 -2.91 -0.02 2.92 15 12 C -0.01 -0.49 5.28 85.16 0.45 -0.04 15 13 N -0.87 -52.41 12.68 21.79 0.28 -52.14 15 14 Si 1.12 49.60 29.99 68.60 2.06 51.66 15 15 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 17 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 18 C -0.28 -14.31 7.13 -18.36 -0.13 -14.44 15 19 C -0.03 -1.38 6.34 30.49 0.19 -1.18 15 20 H 0.08 1.65 8.14 -2.39 -0.02 1.63 15 21 H 0.06 1.57 8.14 -2.39 -0.02 1.55 15 22 H 0.02 0.84 8.14 -2.39 -0.02 0.82 15 23 H 0.08 2.10 7.91 -2.38 -0.02 2.08 15 24 H 0.09 2.29 8.14 -2.39 -0.02 2.27 15 25 H 0.13 7.55 6.89 -2.91 -0.02 7.53 15 26 H 0.28 17.20 6.25 -92.71 -0.58 16.62 15 27 H 0.04 1.74 7.91 -2.39 -0.02 1.72 15 28 H 0.06 2.14 8.14 -2.38 -0.02 2.12 15 Total: -1.00 -71.46 235.71 4.39 -67.07 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.51 Total: 23.63 kcal Atomic # 6 Polarization: -67.24 SS G_CDS: 2.61 Total: -64.63 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -0.79 Total: -77.72 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.06 Total: 51.66 kcal Total: -71.46 4.39 -67.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213800027.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.227 kcal (2) G-P(sol) polarization free energy of solvation -71.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds