Wall clock time and date at job start Mon Mar 30 2020 02:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32648 * 125.53510 * 2 1 4 4 N 1.38865 * 107.72076 * 180.02562 * 3 2 1 5 5 C 1.36309 * 144.82461 * 180.02562 * 4 3 2 6 6 C 1.39183 * 106.48040 * 179.65637 * 5 4 3 7 7 C 1.41146 * 126.35690 * 180.02562 * 6 5 4 8 8 H 1.07999 * 119.99872 * 0.02562 * 7 6 5 9 9 C 1.39708 * 119.99838 * 180.02562 * 7 6 5 10 10 N 1.31016 * 120.00072 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 119.99594 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47334 * 59.99851 * 11 9 7 13 13 H 1.48509 * 109.47035 * 179.97438 * 11 9 7 14 14 H 1.48489 * 109.47329 * 299.99401 * 11 9 7 15 15 N 1.35935 * 107.29055 * 0.02562 * 6 5 4 16 16 C 1.31302 * 109.19644 * 359.97438 * 15 6 5 17 17 O 1.35118 * 143.56997 * 180.02562 * 16 15 6 18 18 H 1.08996 * 109.47360 * 180.24801 * 1 2 3 19 19 H 1.09003 * 109.46623 * 300.24744 * 1 2 3 20 20 H 1.09004 * 109.47052 * 60.24402 * 1 2 3 21 21 H 1.08002 * 126.13598 * 359.76956 * 3 2 1 22 22 H 1.08004 * 126.76153 * 359.63242 * 5 4 3 23 23 H 0.97009 * 119.99991 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2779 1.0794 0.0000 4 7 3.6000 0.6546 -0.0006 5 6 4.9010 1.0613 -0.0006 6 6 5.6761 -0.0947 0.0064 7 6 7.0862 -0.1566 0.0095 8 1 7.6667 0.7541 0.0066 9 6 7.7309 -1.3960 0.0161 10 7 7.0267 -2.5008 0.0200 11 14 9.5971 -1.4779 0.0194 12 1 10.1205 -0.7947 1.2296 13 1 10.0302 -2.8984 0.0271 14 1 10.1242 -0.8060 -1.1953 15 7 4.8231 -1.1531 0.0098 16 6 3.5867 -0.7111 0.0059 17 8 2.2929 -1.1007 0.0060 18 1 -0.3634 -1.0276 0.0044 19 1 -0.3633 0.5177 0.8878 20 1 -0.3633 0.5101 -0.8922 21 1 1.9383 2.1047 -0.0035 22 1 5.2598 2.0800 -0.0055 23 1 7.4744 -3.3614 0.0250 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213808700.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:57 Heat of formation + Delta-G solvation = 61.153028 kcal Electronic energy + Delta-G solvation = -11369.653609 eV Core-core repulsion = 9185.631438 eV Total energy + Delta-G solvation = -2184.022171 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.30733 -40.16881 -35.62613 -34.63725 -32.51382 -30.31997 -28.50238 -26.02740 -23.07216 -22.38760 -21.66708 -18.86164 -17.89806 -17.62563 -16.95686 -16.31581 -15.39326 -14.66160 -14.55737 -14.14287 -13.95020 -13.63070 -13.10282 -12.90621 -12.77487 -12.55807 -12.01907 -11.88935 -10.95231 -10.33219 -9.25868 -8.87180 -8.34743 -6.29212 0.64908 1.37599 1.44522 1.44570 1.59118 1.65386 2.20338 2.34430 2.40038 3.54222 3.66689 3.96122 4.30642 4.42100 4.69106 4.79850 5.03860 5.07129 5.25101 5.38861 5.67553 5.86118 6.22434 6.73152 6.94327 7.05416 7.67238 8.61283 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.107524 B = 0.009557 C = 0.008819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 260.344623 B = 2929.152622 C = 3174.352791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.027 4.027 3 C -0.053 4.053 4 N -0.427 5.427 5 C -0.247 4.247 6 C 0.197 3.803 7 C -0.481 4.481 8 H 0.099 0.901 9 C 0.020 3.980 10 N -0.810 5.810 11 Si 0.998 3.002 12 H -0.256 1.256 13 H -0.274 1.274 14 H -0.256 1.256 15 N -0.489 5.489 16 C 0.273 3.727 17 O -0.201 6.201 18 H 0.084 0.916 19 H 0.114 0.886 20 H 0.114 0.886 21 H 0.224 0.776 22 H 0.177 0.823 23 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.764 5.940 -0.030 10.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.077 4.077 3 C -0.170 4.170 4 N -0.117 5.117 5 C -0.371 4.371 6 C 0.075 3.925 7 C -0.515 4.515 8 H 0.117 0.883 9 C -0.196 4.196 10 N -0.435 5.435 11 Si 0.818 3.182 12 H -0.180 1.180 13 H -0.199 1.199 14 H -0.180 1.180 15 N -0.230 5.230 16 C -0.019 4.019 17 O -0.098 6.098 18 H 0.103 0.897 19 H 0.133 0.867 20 H 0.133 0.867 21 H 0.240 0.760 22 H 0.195 0.805 23 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.693 4.847 -0.027 9.953 hybrid contribution 0.604 0.592 -0.003 0.845 sum -8.090 5.438 -0.030 9.748 Atomic orbital electron populations 1.20545 0.78993 1.05522 1.06088 1.23273 0.96496 0.80890 1.07067 1.22542 0.79239 1.02439 1.12758 1.44035 1.06108 1.09122 1.52396 1.22187 0.78677 0.99761 1.36463 1.19046 0.93814 0.84732 0.94955 1.18963 0.88263 0.94735 1.49499 0.88334 1.26987 1.06163 0.94387 0.92065 1.70248 1.39244 0.98881 1.35145 0.85044 0.74984 0.78062 0.80126 1.18044 1.19873 1.18037 1.71505 0.91886 1.30413 1.29232 1.23454 0.87470 0.80767 1.10199 1.84452 1.10807 1.33615 1.80894 0.89681 0.86747 0.86749 0.75977 0.80540 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.40 71.24 0.74 -0.21 14 2 C -0.03 -0.89 7.26 24.52 0.18 -0.72 14 3 C -0.05 -1.88 11.83 82.41 0.98 -0.91 14 4 N -0.43 -21.08 3.50 -466.25 -1.63 -22.71 14 5 C -0.25 -13.13 12.11 84.22 1.02 -12.11 14 6 C 0.20 12.08 6.68 39.45 0.26 12.34 14 7 C -0.48 -28.23 9.37 23.34 0.22 -28.01 14 8 H 0.10 5.25 7.84 -2.91 -0.02 5.23 14 9 C 0.02 1.11 5.49 85.17 0.47 1.58 14 10 N -0.81 -48.95 11.93 21.79 0.26 -48.69 14 11 Si 1.00 41.28 29.56 68.60 2.03 43.31 14 12 H -0.26 -10.04 7.11 99.48 0.71 -9.33 14 13 H -0.27 -10.90 7.11 99.48 0.71 -10.19 14 14 H -0.26 -10.04 7.11 99.48 0.71 -9.33 14 15 N -0.49 -31.31 9.54 -305.72 -2.92 -34.22 14 16 C 0.27 15.28 9.74 179.53 1.75 17.02 14 17 O -0.20 -9.38 10.77 -20.24 -0.22 -9.60 14 18 H 0.08 1.42 8.14 -2.39 -0.02 1.40 14 19 H 0.11 1.35 8.14 -2.39 -0.02 1.33 14 20 H 0.11 1.35 8.14 -2.38 -0.02 1.33 14 21 H 0.22 5.31 8.06 -2.91 -0.02 5.29 14 22 H 0.18 8.16 8.06 -2.91 -0.02 8.13 14 23 H 0.28 15.20 8.30 -92.70 -0.77 14.43 14 Total: -1.00 -79.00 216.19 4.36 -74.64 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.22 Total: 8.30 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 5.61 Total: -11.01 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -4.29 Total: -105.63 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.22 Total: -9.60 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -79.00 4.36 -74.64 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213808700.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.791 kcal (2) G-P(sol) polarization free energy of solvation -78.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds