Wall clock time and date at job start Mon Mar 30 2020 02:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32748 * 126.12788 * 2 1 4 4 C 1.32330 * 110.11616 * 180.02562 * 3 2 1 5 5 O 1.34865 * 143.63321 * 180.02562 * 4 3 2 6 6 C 1.35134 * 108.80568 * 179.97438 * 5 4 3 7 7 C 1.32843 * 108.75800 * 359.97438 * 6 5 4 8 8 N 1.36018 * 108.98994 * 0.02562 * 4 3 2 9 9 C 1.38642 * 107.17831 * 359.81205 * 8 4 3 10 10 C 1.39919 * 127.01776 * 180.34271 * 9 8 4 11 11 H 1.07995 * 120.00517 * 203.70625 * 10 9 8 12 12 C 1.39922 * 119.99807 * 23.70690 * 10 9 8 13 13 N 1.31009 * 120.00128 * 15.29830 * 12 10 9 14 14 Si 1.86800 * 119.99719 * 195.30226 * 12 10 9 15 15 H 1.48501 * 109.47510 * 59.99726 * 14 12 10 16 16 H 1.48502 * 109.47081 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47161 * 299.99648 * 14 12 10 18 18 H 1.08996 * 109.47024 * 94.51411 * 1 2 3 19 19 H 1.09002 * 109.47079 * 214.51512 * 1 2 3 20 20 H 1.08994 * 109.46479 * 334.51377 * 1 2 3 21 21 H 1.07999 * 125.62462 * 179.97438 * 6 5 4 22 22 H 1.08008 * 126.18661 * 179.97438 * 7 6 5 23 23 H 0.97007 * 119.99666 * 174.28975 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2897 1.0722 0.0000 4 6 3.5617 0.7072 -0.0006 5 8 4.8261 1.1763 -0.0005 6 6 5.6795 0.1285 -0.0009 7 6 4.9739 -0.9971 -0.0006 8 7 3.6323 -0.6511 -0.0015 9 6 2.3308 -1.1289 0.0028 10 6 1.9250 -2.4679 0.0102 11 1 0.9483 -2.7383 -0.3630 12 6 2.7846 -3.4567 0.5012 13 7 3.8270 -3.1205 1.2202 14 14 2.4461 -5.2562 0.1315 15 1 2.4555 -5.4700 -1.3381 16 1 3.4964 -6.0969 0.7602 17 1 1.1175 -5.6323 0.6778 18 1 -0.3633 -0.0809 -1.0244 19 1 -0.3633 -0.8468 0.5823 20 1 -0.3632 0.9276 0.4422 21 1 6.7574 0.1951 -0.0014 22 1 5.3738 -2.0004 -0.0011 23 1 4.3757 -3.8077 1.6297 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213808859.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:00 Heat of formation + Delta-G solvation = 76.013237 kcal Electronic energy + Delta-G solvation = -11762.437235 eV Core-core repulsion = 9579.059450 eV Total energy + Delta-G solvation = -2183.377784 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -42.22132 -38.25381 -33.83833 -32.73692 -29.93730 -28.96819 -26.56853 -24.27754 -20.99072 -20.59758 -19.25611 -17.59796 -15.72798 -15.40416 -15.15395 -14.41319 -14.15590 -12.85149 -12.73274 -12.33630 -11.77615 -11.61725 -11.43048 -11.29413 -11.11751 -10.76369 -10.40946 -9.95534 -9.42326 -8.57911 -7.31242 -7.04850 -6.82750 -4.31765 2.54069 2.95857 2.99174 3.02956 3.44149 3.74109 3.84689 4.19961 4.23786 5.04510 5.66987 5.90500 6.25929 6.41516 6.72209 6.73798 6.79009 6.98577 7.07571 7.28254 7.53862 7.80016 8.32616 8.56082 8.66052 8.93829 9.50413 10.09707 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.038268 B = 0.017262 C = 0.012287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.500552 B = 1621.673112 C = 2278.231934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 C -0.118 4.118 3 N -0.450 5.450 4 C 0.230 3.770 5 O -0.198 6.198 6 C -0.090 4.090 7 C 0.045 3.955 8 N -0.428 5.428 9 C 0.208 3.792 10 C -0.446 4.446 11 H 0.098 0.902 12 C 0.068 3.932 13 N -0.824 5.824 14 Si 0.920 3.080 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.264 1.264 18 H 0.043 0.957 19 H 0.058 0.942 20 H 0.049 0.951 21 H 0.208 0.792 22 H 0.177 0.823 23 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.149 -2.129 -1.476 3.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.244 4.244 3 N -0.186 5.186 4 C -0.058 4.058 5 O -0.096 6.096 6 C -0.157 4.157 7 C -0.073 4.073 8 N -0.118 5.118 9 C 0.099 3.901 10 C -0.481 4.481 11 H 0.116 0.884 12 C -0.147 4.147 13 N -0.453 5.453 14 Si 0.744 3.256 15 H -0.189 1.189 16 H -0.205 1.205 17 H -0.188 1.188 18 H 0.062 0.938 19 H 0.077 0.923 20 H 0.068 0.932 21 H 0.224 0.776 22 H 0.194 0.806 23 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.205 -1.296 -1.415 2.923 hybrid contribution 0.593 -1.904 0.108 1.997 sum 2.799 -3.200 -1.307 4.447 Atomic orbital electron populations 1.19497 0.88307 1.00603 0.99881 1.20592 0.94600 0.85909 1.23324 1.69197 0.93308 1.31529 1.24519 1.21777 0.86860 0.79440 1.17740 1.84281 1.10866 1.31635 1.82845 1.23523 0.95575 0.83321 1.13265 1.22071 0.81589 0.99816 1.03864 1.44039 1.05070 1.08586 1.54076 1.18097 0.77488 0.94365 1.00193 1.18515 1.02336 0.88483 1.38730 0.88385 1.25949 0.93719 1.02040 0.93013 1.69818 1.14715 1.36277 1.24477 0.86161 0.79122 0.80550 0.79729 1.18935 1.20468 1.18805 0.93833 0.92268 0.93178 0.77573 0.80559 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.53 10.22 36.01 0.37 -0.16 14 2 C -0.12 -3.14 7.23 -81.63 -0.59 -3.73 14 3 N -0.45 -12.52 11.21 -9.87 -0.11 -12.63 14 4 C 0.23 6.25 9.75 -87.93 -0.86 5.39 14 5 O -0.20 -4.73 10.75 1.81 0.02 -4.71 14 6 C -0.09 -1.77 12.02 28.88 0.35 -1.43 14 7 C 0.04 1.02 10.29 -16.37 -0.17 0.85 14 8 N -0.43 -11.51 3.24 -62.11 -0.20 -11.71 14 9 C 0.21 5.76 6.51 -83.59 -0.54 5.21 14 10 C -0.45 -11.68 9.02 -38.32 -0.35 -12.02 14 11 H 0.10 2.40 7.89 -52.49 -0.41 1.99 14 12 C 0.07 1.67 5.43 -17.27 -0.09 1.58 14 13 N -0.82 -20.59 10.00 55.55 0.56 -20.04 14 14 Si 0.92 18.24 29.59 -169.99 -5.03 13.21 14 15 H -0.26 -5.23 7.11 56.52 0.40 -4.83 14 16 H -0.28 -5.42 7.11 56.52 0.40 -5.02 14 17 H -0.26 -5.15 7.11 56.52 0.40 -4.75 14 18 H 0.04 0.85 8.14 -51.93 -0.42 0.42 14 19 H 0.06 1.19 8.08 -51.93 -0.42 0.77 14 20 H 0.05 0.99 8.14 -51.93 -0.42 0.57 14 21 H 0.21 2.80 8.06 -52.49 -0.42 2.38 14 22 H 0.18 3.78 6.84 -52.48 -0.36 3.42 14 23 H 0.28 6.44 8.31 -40.82 -0.34 6.10 14 LS Contribution 212.06 15.07 3.20 3.20 Total: -1.00 -30.89 212.06 -5.05 -35.94 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -1.60 Total: 1.06 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.88 Total: -4.31 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.24 Total: -44.38 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: 0.02 Total: -4.71 kcal Atomic # 14 Polarization: 18.24 SS G_CDS: -5.03 Total: 13.21 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -30.89 -5.05 -35.94 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213808859.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.952 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds