Wall clock time and date at job start Mon Mar 30 2020 02:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34553 * 125.80834 * 2 1 4 4 N 1.37544 * 106.86093 * 179.97438 * 3 2 1 5 5 C 1.37366 * 144.88174 * 180.02562 * 4 3 2 6 6 C 1.37958 * 107.19910 * 179.97438 * 5 4 3 7 7 C 1.40092 * 126.07871 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00323 * 354.29205 * 7 6 5 9 9 C 1.40037 * 119.99886 * 174.28753 * 7 6 5 10 10 N 1.30872 * 119.99830 * 6.05655 * 9 7 6 11 11 Si 1.86792 * 120.00106 * 186.05663 * 9 7 6 12 12 H 1.48504 * 109.47294 * 94.98203 * 11 9 7 13 13 H 1.48497 * 109.47166 * 214.98201 * 11 9 7 14 14 H 1.48508 * 109.47004 * 334.98368 * 11 9 7 15 15 O 1.35548 * 107.83875 * 0.02562 * 6 5 4 16 16 C 1.35227 * 108.74652 * 359.97438 * 15 6 5 17 17 N 1.31439 * 143.55414 * 180.02562 * 16 15 6 18 18 H 1.08999 * 109.47308 * 89.99620 * 1 2 3 19 19 H 1.09000 * 109.46955 * 209.99630 * 1 2 3 20 20 H 1.08995 * 109.47241 * 329.99537 * 1 2 3 21 21 H 1.07996 * 126.56503 * 359.93803 * 3 2 1 22 22 H 1.08002 * 126.39750 * 0.02562 * 5 4 3 23 23 H 0.96994 * 119.99993 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2942 1.0912 0.0000 4 7 3.5951 0.6446 0.0006 5 6 4.9144 1.0272 0.0013 6 6 5.6732 -0.1250 0.0021 7 6 7.0726 -0.1912 0.0025 8 1 7.6560 0.7128 -0.0908 9 6 7.7149 -1.4296 0.1240 10 7 7.0130 -2.5342 0.1179 11 14 9.5735 -1.5050 0.2948 12 1 9.9360 -1.5748 1.7332 13 1 10.0863 -2.7108 -0.4039 14 1 10.1758 -0.2893 -0.3090 15 8 4.8240 -1.1815 0.0013 16 6 3.5537 -0.7180 0.0006 17 7 2.2928 -1.0891 0.0000 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3633 -0.8900 0.5138 20 1 -0.3633 0.8899 0.5139 21 1 1.9671 2.1204 -0.0009 22 1 5.2878 2.0406 0.0021 23 1 7.4579 -3.3920 0.2017 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213809029.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:01 Heat of formation + Delta-G solvation = 44.488298 kcal Electronic energy + Delta-G solvation = -11401.921813 eV Core-core repulsion = 9217.177005 eV Total energy + Delta-G solvation = -2184.744808 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 192.064 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.13550 -40.41505 -35.81334 -34.85694 -32.03086 -30.95731 -28.60801 -26.08444 -22.76004 -22.65546 -21.45753 -19.59372 -17.62249 -17.33818 -17.17297 -16.81900 -15.34576 -14.75997 -14.26699 -14.09524 -13.84560 -13.45043 -13.25164 -13.03667 -13.01234 -12.81456 -11.99591 -11.95584 -11.30947 -10.91967 -9.43507 -8.98046 -8.91661 -6.77682 0.87645 1.37607 1.41695 1.58556 1.68177 1.74015 2.09527 2.11269 2.34894 2.93295 3.90705 4.10257 4.50982 4.68796 4.72273 4.90324 4.96863 4.99870 5.15680 5.28382 5.65198 5.89669 5.97945 6.33242 6.45461 6.94246 7.21454 8.03959 Molecular weight = 192.06amu Principal moments of inertia in cm(-1) A = 0.108365 B = 0.009651 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 258.323820 B = 2900.432865 C = 3141.033638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 C 0.005 3.995 3 C -0.108 4.108 4 N -0.371 5.371 5 C -0.323 4.323 6 C 0.202 3.798 7 C -0.446 4.446 8 H 0.141 0.859 9 C 0.018 3.982 10 N -0.806 5.806 11 Si 1.021 2.979 12 H -0.257 1.257 13 H -0.266 1.266 14 H -0.239 1.239 15 O -0.181 6.181 16 C 0.240 3.760 17 N -0.520 5.520 18 H 0.080 0.920 19 H 0.067 0.933 20 H 0.099 0.901 21 H 0.204 0.796 22 H 0.186 0.814 23 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 4.806 0.282 4.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.127 4.127 3 C -0.240 4.240 4 N -0.052 5.052 5 C -0.440 4.440 6 C 0.151 3.849 7 C -0.473 4.473 8 H 0.158 0.842 9 C -0.202 4.202 10 N -0.430 5.430 11 Si 0.837 3.163 12 H -0.182 1.182 13 H -0.190 1.190 14 H -0.162 1.162 15 O -0.076 6.076 16 C -0.051 4.051 17 N -0.257 5.257 18 H 0.099 0.901 19 H 0.086 0.914 20 H 0.118 0.882 21 H 0.221 0.779 22 H 0.203 0.797 23 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.669 3.672 0.282 3.743 hybrid contribution 0.891 0.508 0.039 1.026 sum 0.222 4.180 0.322 4.198 Atomic orbital electron populations 1.20071 0.83347 1.03789 1.03303 1.21455 0.98126 0.86067 1.07037 1.22308 0.78788 1.01664 1.21221 1.43804 1.06591 1.09225 1.45584 1.21842 0.78308 0.99517 1.44343 1.20085 0.91295 0.80483 0.92988 1.19493 0.86014 0.97284 1.44528 0.84180 1.27508 1.08636 0.93525 0.90503 1.69891 1.41984 1.00576 1.30560 0.84608 0.71622 0.80151 0.79893 1.18170 1.19012 1.16167 1.84978 1.09416 1.32904 1.80285 1.22908 0.88453 0.80618 1.13155 1.69928 0.94187 1.31750 1.29837 0.90097 0.91399 0.88207 0.77894 0.79744 0.88699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.36 10.42 71.23 0.74 -0.62 14 2 C 0.01 0.22 7.08 41.33 0.29 0.52 14 3 C -0.11 -4.62 11.95 82.95 0.99 -3.63 14 4 N -0.37 -19.37 3.49 -466.21 -1.63 -20.99 14 5 C -0.32 -16.66 12.02 83.76 1.01 -15.65 14 6 C 0.20 11.30 6.76 22.65 0.15 11.45 14 7 C -0.45 -22.42 9.31 23.16 0.22 -22.21 14 8 H 0.14 6.13 7.85 -2.91 -0.02 6.10 14 9 C 0.02 0.84 5.49 85.27 0.47 1.31 14 10 N -0.81 -42.36 12.03 21.85 0.26 -42.10 14 11 Si 1.02 34.03 29.57 68.60 2.03 36.06 14 12 H -0.26 -8.28 7.11 99.48 0.71 -7.58 14 13 H -0.27 -8.55 7.11 99.48 0.71 -7.84 14 14 H -0.24 -7.27 7.11 99.48 0.71 -6.57 14 15 O -0.18 -11.17 9.09 -24.64 -0.22 -11.39 14 16 C 0.24 13.99 9.73 179.58 1.75 15.73 14 17 N -0.52 -27.91 11.29 -301.57 -3.40 -31.31 14 18 H 0.08 2.02 8.14 -2.39 -0.02 2.00 14 19 H 0.07 1.91 8.14 -2.39 -0.02 1.89 14 20 H 0.10 2.14 8.14 -2.39 -0.02 2.12 14 21 H 0.20 6.60 8.06 -2.91 -0.02 6.58 14 22 H 0.19 8.21 8.06 -2.91 -0.02 8.19 14 23 H 0.30 14.04 8.30 -92.71 -0.77 13.27 14 Total: -1.00 -68.54 216.23 3.88 -64.66 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 1.22 Total: 18.17 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: 5.62 Total: -13.09 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -4.77 Total: -94.41 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.22 Total: -11.39 kcal Atomic # 14 Polarization: 34.03 SS G_CDS: 2.03 Total: 36.06 kcal Total: -68.54 3.88 -64.66 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213809029.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.150 kcal (2) G-P(sol) polarization free energy of solvation -68.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds