Wall clock time and date at job start Mon Mar 30 2020 02:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47266 * 2 1 4 4 C 1.38358 * 119.97356 * 265.23450 * 3 2 1 5 5 C 1.38776 * 120.58712 * 180.27754 * 4 3 2 6 6 C 1.36531 * 120.54267 * 359.74513 * 5 4 3 7 7 C 1.40689 * 119.92527 * 359.97438 * 6 5 4 8 8 C 1.41152 * 120.28991 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00689 * 204.66682 * 8 7 6 10 10 C 1.39935 * 119.99536 * 24.67339 * 8 7 6 11 11 N 1.30870 * 120.00318 * 17.73936 * 10 8 7 12 12 Si 1.86803 * 119.99841 * 197.73418 * 10 8 7 13 13 H 1.48504 * 109.47019 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46895 * 119.99840 * 12 10 8 15 15 H 1.48501 * 109.47393 * 239.99946 * 12 10 8 16 16 C 1.38406 * 119.97609 * 84.99880 * 3 2 1 17 17 O 1.35645 * 120.26274 * 359.97438 * 16 3 2 18 18 H 1.08996 * 109.47144 * 299.99988 * 1 2 3 19 19 H 1.08999 * 109.46643 * 60.00173 * 1 2 3 20 20 H 1.08998 * 109.47374 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47144 * 240.00012 * 2 1 3 22 22 H 1.08998 * 109.47136 * 120.00021 * 2 1 3 23 23 H 1.07994 * 119.70314 * 359.97438 * 4 3 2 24 24 H 1.07994 * 119.73186 * 179.76196 * 5 4 3 25 25 H 1.08001 * 120.03660 * 180.02562 * 6 5 4 26 26 H 0.97002 * 119.99689 * 180.02562 * 11 10 8 27 27 H 0.96696 * 114.00477 * 269.72446 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3567 2.0393 -1.1944 5 6 2.8259 3.3453 -1.2087 6 6 2.9704 4.0434 -0.0443 7 6 2.6417 3.4381 1.1824 8 6 2.7886 4.1525 2.3908 9 1 2.9291 3.6197 3.3196 10 6 2.7520 5.5514 2.3853 11 7 2.2468 6.1888 1.3601 12 14 3.4241 6.5090 3.8416 13 1 3.9359 5.5610 4.8637 14 1 4.5295 7.3902 3.3869 15 1 2.3418 7.3371 4.4317 16 6 2.1644 2.1076 1.1944 17 8 1.8427 1.5072 2.3674 18 1 -0.3633 0.5138 0.8899 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 1.8934 -0.5138 0.8900 23 1 2.2484 1.4993 -2.1233 24 1 3.0786 3.8133 -2.1486 25 1 3.3359 5.0595 -0.0650 26 1 2.2218 7.1585 1.3562 27 1 0.9209 1.6303 2.6324 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213811716.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:01 Heat of formation + Delta-G solvation = -44.832878 kcal Electronic energy + Delta-G solvation = -11700.436941 eV Core-core repulsion = 9615.359220 eV Total energy + Delta-G solvation = -2085.077722 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.34991 -35.13033 -34.20954 -32.48193 -29.24370 -27.74246 -25.16118 -22.86011 -20.72826 -19.88667 -16.94716 -16.72851 -15.35094 -14.56955 -14.28507 -13.68115 -13.08707 -12.94258 -12.70002 -11.91493 -11.60624 -11.41533 -11.27852 -10.84094 -10.67809 -10.51933 -10.32993 -10.19456 -9.58843 -9.17814 -8.85986 -7.36604 -7.18015 -6.77528 -4.34774 2.72808 2.88748 3.06870 3.13578 3.19912 3.92421 4.57430 5.43779 5.60707 5.70147 5.88102 6.06474 6.26838 6.36178 6.39497 6.56922 6.64803 6.78091 7.04254 7.22936 7.35257 7.51152 7.80560 7.97227 8.09961 8.24789 8.50990 8.79543 8.84595 9.23921 10.14667 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.052298 B = 0.011877 C = 0.010323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.267953 B = 2356.836967 C = 2711.789162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 C -0.079 4.079 4 C -0.230 4.230 5 C -0.109 4.109 6 C -0.158 4.158 7 C 0.094 3.906 8 C -0.450 4.450 9 H 0.084 0.916 10 C 0.074 3.926 11 N -0.793 5.793 12 Si 0.909 3.091 13 H -0.259 1.259 14 H -0.272 1.272 15 H -0.275 1.275 16 C -0.023 4.023 17 O -0.492 6.492 18 H 0.051 0.949 19 H 0.050 0.950 20 H 0.045 0.955 21 H 0.054 0.946 22 H 0.065 0.935 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.119 0.881 26 H 0.280 0.720 27 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 -3.322 -0.521 3.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C -0.080 4.080 4 C -0.249 4.249 5 C -0.127 4.127 6 C -0.178 4.178 7 C 0.091 3.909 8 C -0.479 4.479 9 H 0.102 0.898 10 C -0.144 4.144 11 N -0.418 5.418 12 Si 0.734 3.266 13 H -0.183 1.183 14 H -0.197 1.197 15 H -0.200 1.200 16 C -0.068 4.068 17 O -0.299 6.299 18 H 0.070 0.930 19 H 0.069 0.931 20 H 0.064 0.936 21 H 0.073 0.927 22 H 0.083 0.917 23 H 0.107 0.893 24 H 0.106 0.894 25 H 0.137 0.863 26 H 0.091 0.909 27 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.111 -3.258 -0.605 3.495 hybrid contribution -0.292 0.802 0.524 1.001 sum -1.403 -2.457 -0.081 2.831 Atomic orbital electron populations 1.21655 0.96081 1.00140 1.01745 1.20305 0.95128 0.94597 1.01171 1.19618 1.00601 0.94745 0.93010 1.20113 1.13454 0.96179 0.95201 1.20428 1.00792 0.94450 0.97052 1.20982 1.04640 1.00598 0.91544 1.17897 0.89200 0.90089 0.93750 1.19556 1.42601 0.90609 0.95177 0.89801 1.25982 0.92592 0.98491 0.97333 1.69861 1.31824 1.10042 1.30107 0.86243 0.79358 0.79513 0.81524 1.18276 1.19692 1.19996 1.18277 1.10984 0.93970 0.83616 1.84708 1.31008 1.75510 1.38660 0.92993 0.93064 0.93630 0.92709 0.91660 0.89332 0.89385 0.86309 0.90895 0.79546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.90 37.16 0.37 -1.88 15 2 C -0.07 -1.39 5.78 -27.88 -0.16 -1.56 15 3 C -0.08 -1.82 5.14 -104.52 -0.54 -2.36 15 4 C -0.23 -5.27 9.68 -39.34 -0.38 -5.65 15 5 C -0.11 -2.60 9.97 -40.00 -0.40 -3.00 15 6 C -0.16 -4.19 8.64 -39.27 -0.34 -4.53 15 7 C 0.09 2.56 5.58 -106.68 -0.60 1.96 15 8 C -0.45 -12.20 8.72 -37.84 -0.33 -12.53 15 9 H 0.08 2.26 7.65 -52.49 -0.40 1.86 15 10 C 0.07 1.86 5.14 -17.33 -0.09 1.78 15 11 N -0.79 -20.51 10.96 55.55 0.61 -19.90 15 12 Si 0.91 18.86 29.59 -169.99 -5.03 13.83 15 13 H -0.26 -5.39 7.11 56.52 0.40 -4.98 15 14 H -0.27 -5.53 7.11 56.52 0.40 -5.13 15 15 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 16 C -0.02 -0.58 6.71 -38.34 -0.26 -0.84 15 17 O -0.49 -11.40 11.94 -18.64 -0.22 -11.62 15 18 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 19 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 20 H 0.04 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.05 0.94 8.05 -51.93 -0.42 0.52 15 22 H 0.06 1.23 7.69 -51.93 -0.40 0.83 15 23 H 0.09 1.80 8.06 -52.49 -0.42 1.38 15 24 H 0.09 1.87 8.06 -52.49 -0.42 1.45 15 25 H 0.12 3.22 6.16 -52.49 -0.32 2.89 15 26 H 0.28 6.55 8.30 -40.82 -0.34 6.21 15 27 H 0.35 6.86 9.06 45.56 0.41 7.27 15 LS Contribution 236.53 15.07 3.56 3.56 Total: -1.00 -28.39 236.53 -6.18 -34.57 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -2.38 Total: 8.17 kcal Atomic # 6 Polarization: -25.88 SS G_CDS: -2.72 Total: -28.61 kcal Atomic # 7 Polarization: -20.51 SS G_CDS: 0.61 Total: -19.90 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.22 Total: -11.62 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -28.39 -6.18 -34.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213811716.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.263 kcal (2) G-P(sol) polarization free energy of solvation -28.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds