Wall clock time and date at job start Mon Mar 30 2020 02:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47266 * 2 1 4 4 C 1.38358 * 119.97356 * 265.23450 * 3 2 1 5 5 C 1.38776 * 120.58712 * 180.27754 * 4 3 2 6 6 C 1.36531 * 120.54267 * 359.74513 * 5 4 3 7 7 C 1.40689 * 119.92527 * 359.97438 * 6 5 4 8 8 C 1.41152 * 120.28991 * 179.97438 * 7 6 5 9 9 H 1.07999 * 120.00689 * 204.66682 * 8 7 6 10 10 C 1.39935 * 119.99536 * 24.67339 * 8 7 6 11 11 N 1.30870 * 120.00318 * 17.73936 * 10 8 7 12 12 Si 1.86803 * 119.99841 * 197.73418 * 10 8 7 13 13 H 1.48504 * 109.47019 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46895 * 119.99840 * 12 10 8 15 15 H 1.48501 * 109.47393 * 239.99946 * 12 10 8 16 16 C 1.38406 * 119.97609 * 84.99880 * 3 2 1 17 17 O 1.35645 * 120.26274 * 359.97438 * 16 3 2 18 18 H 1.08996 * 109.47144 * 299.99988 * 1 2 3 19 19 H 1.08999 * 109.46643 * 60.00173 * 1 2 3 20 20 H 1.08998 * 109.47374 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47144 * 240.00012 * 2 1 3 22 22 H 1.08998 * 109.47136 * 120.00021 * 2 1 3 23 23 H 1.07994 * 119.70314 * 359.97438 * 4 3 2 24 24 H 1.07994 * 119.73186 * 179.76196 * 5 4 3 25 25 H 1.08001 * 120.03660 * 180.02562 * 6 5 4 26 26 H 0.97002 * 119.99689 * 180.02562 * 11 10 8 27 27 H 0.96696 * 114.00477 * 269.72446 * 17 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3567 2.0393 -1.1944 5 6 2.8259 3.3453 -1.2087 6 6 2.9704 4.0434 -0.0443 7 6 2.6417 3.4381 1.1824 8 6 2.7886 4.1525 2.3908 9 1 2.9291 3.6197 3.3196 10 6 2.7520 5.5514 2.3853 11 7 2.2468 6.1888 1.3601 12 14 3.4241 6.5090 3.8416 13 1 3.9359 5.5610 4.8637 14 1 4.5295 7.3902 3.3869 15 1 2.3418 7.3371 4.4317 16 6 2.1644 2.1076 1.1944 17 8 1.8427 1.5072 2.3674 18 1 -0.3633 0.5138 0.8899 19 1 -0.3632 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8934 -0.5138 -0.8899 22 1 1.8934 -0.5138 0.8900 23 1 2.2484 1.4993 -2.1233 24 1 3.0786 3.8133 -2.1486 25 1 3.3359 5.0595 -0.0650 26 1 2.2218 7.1585 1.3562 27 1 0.9209 1.6303 2.6324 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213811716.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:01 Heat of formation + Delta-G solvation = -62.342186 kcal Electronic energy + Delta-G solvation = -11701.196202 eV Core-core repulsion = 9615.359220 eV Total energy + Delta-G solvation = -2085.836982 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.19565 -36.99767 -36.01111 -34.15502 -31.13717 -29.45980 -27.10165 -24.42620 -22.61760 -21.67033 -18.84800 -18.59690 -17.20148 -16.34369 -16.01654 -15.47977 -14.70907 -14.49463 -14.43994 -13.56183 -13.30055 -13.17692 -13.01370 -12.54805 -12.34457 -12.13163 -12.04934 -11.82411 -11.40091 -11.05350 -10.69565 -9.30412 -9.05034 -8.65809 -6.34904 0.89208 1.01247 1.36519 1.48816 1.52400 2.19346 2.68009 3.54227 4.00475 4.18736 4.29104 4.58541 4.62837 4.85480 4.90544 5.02786 5.08233 5.13912 5.33524 5.41272 5.50725 5.66286 5.92787 6.06274 6.16975 6.34345 6.58129 6.87004 6.88527 7.40199 8.28808 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.052298 B = 0.011877 C = 0.010323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.267953 B = 2356.836967 C = 2711.789162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.072 4.072 3 C -0.082 4.082 4 C -0.229 4.229 5 C -0.112 4.112 6 C -0.186 4.186 7 C 0.059 3.941 8 C -0.487 4.487 9 H 0.072 0.928 10 C 0.035 3.965 11 N -0.822 5.822 12 Si 0.983 3.017 13 H -0.262 1.262 14 H -0.263 1.263 15 H -0.262 1.262 16 C -0.041 4.041 17 O -0.497 6.497 18 H 0.042 0.958 19 H 0.050 0.950 20 H 0.077 0.923 21 H 0.076 0.924 22 H 0.062 0.938 23 H 0.121 0.879 24 H 0.113 0.887 25 H 0.103 0.897 26 H 0.289 0.711 27 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.009 -4.068 -0.853 4.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.109 4.109 3 C -0.083 4.083 4 C -0.248 4.248 5 C -0.130 4.130 6 C -0.206 4.206 7 C 0.056 3.944 8 C -0.516 4.516 9 H 0.090 0.910 10 C -0.180 4.180 11 N -0.448 5.448 12 Si 0.804 3.196 13 H -0.186 1.186 14 H -0.187 1.187 15 H -0.187 1.187 16 C -0.086 4.086 17 O -0.305 6.305 18 H 0.062 0.938 19 H 0.069 0.931 20 H 0.096 0.904 21 H 0.094 0.906 22 H 0.081 0.919 23 H 0.139 0.861 24 H 0.131 0.869 25 H 0.121 0.879 26 H 0.100 0.900 27 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.482 -4.017 -0.950 4.385 hybrid contribution -0.221 0.934 0.548 1.105 sum -1.704 -3.083 -0.402 3.545 Atomic orbital electron populations 1.21621 0.94068 1.02147 1.01328 1.20362 0.96787 0.91688 1.02087 1.20101 0.99272 0.96798 0.92116 1.20536 1.11892 0.95828 0.96573 1.20744 1.00017 0.95071 0.97216 1.20958 1.06651 1.00445 0.92531 1.18313 0.90210 0.91556 0.94308 1.19669 1.45174 0.91945 0.94837 0.90995 1.26787 0.92141 0.98755 1.00292 1.69894 1.32220 1.10813 1.31872 0.85147 0.78949 0.77852 0.77671 1.18616 1.18721 1.18670 1.18538 1.11350 0.93765 0.84936 1.84633 1.32438 1.75100 1.38355 0.93834 0.93110 0.90428 0.90584 0.91939 0.86089 0.86937 0.87944 0.89997 0.77780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.94 9.90 71.98 0.71 -3.23 15 2 C -0.07 -2.48 5.78 29.85 0.17 -2.31 15 3 C -0.08 -3.66 5.14 -19.80 -0.10 -3.76 15 4 C -0.23 -10.02 9.68 22.43 0.22 -9.80 15 5 C -0.11 -5.30 9.97 22.00 0.22 -5.08 15 6 C -0.19 -10.08 8.64 22.47 0.19 -9.88 15 7 C 0.06 3.30 5.58 -21.20 -0.12 3.18 15 8 C -0.49 -27.24 8.72 23.40 0.20 -27.04 15 9 H 0.07 4.03 7.65 -2.91 -0.02 4.01 15 10 C 0.04 1.82 5.14 85.25 0.44 2.25 15 11 N -0.82 -43.35 10.96 21.83 0.24 -43.11 15 12 Si 0.98 39.05 29.59 68.60 2.03 41.08 15 13 H -0.26 -10.43 7.11 99.48 0.71 -9.72 15 14 H -0.26 -9.96 7.11 99.48 0.71 -9.26 15 15 H -0.26 -9.81 7.11 99.48 0.71 -9.10 15 16 C -0.04 -2.06 6.71 23.08 0.15 -1.90 15 17 O -0.50 -23.08 11.94 -89.60 -1.07 -24.15 15 18 H 0.04 1.33 8.14 -2.39 -0.02 1.31 15 19 H 0.05 1.49 8.14 -2.39 -0.02 1.47 15 20 H 0.08 1.79 8.14 -2.39 -0.02 1.77 15 21 H 0.08 2.31 8.05 -2.39 -0.02 2.29 15 22 H 0.06 2.20 7.69 -2.39 -0.02 2.18 15 23 H 0.12 4.47 8.06 -2.91 -0.02 4.44 15 24 H 0.11 4.62 8.06 -2.91 -0.02 4.60 15 25 H 0.10 5.75 6.16 -2.91 -0.02 5.74 15 26 H 0.29 13.67 8.30 -92.71 -0.77 12.90 15 27 H 0.37 14.35 9.06 -74.06 -0.67 13.67 15 Total: -1.00 -61.26 236.53 3.79 -57.47 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.50 Total: 26.29 kcal Atomic # 6 Polarization: -59.67 SS G_CDS: 2.09 Total: -57.57 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.24 Total: -43.11 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -1.07 Total: -24.15 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -61.26 3.79 -57.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213811716.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.877 kcal (2) G-P(sol) polarization free energy of solvation -61.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds