Wall clock time and date at job start Mon Mar 30 2020 02:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99629 * 2 1 4 4 C 1.50697 * 109.46975 * 179.97438 * 3 2 1 5 5 C 1.38656 * 119.87733 * 270.24782 * 4 3 2 6 6 C 1.38611 * 120.50290 * 180.29866 * 5 4 3 7 7 C 1.37646 * 120.24720 * 359.45638 * 6 5 4 8 8 C 1.40700 * 119.74049 * 0.26612 * 7 6 5 9 9 C 1.41394 * 120.23887 * 179.97438 * 8 7 6 10 10 H 1.08003 * 119.99918 * 204.39256 * 9 8 7 11 11 C 1.39939 * 120.00458 * 24.38628 * 9 8 7 12 12 N 1.30826 * 119.99815 * 17.86380 * 11 9 8 13 13 Si 1.86807 * 120.00442 * 197.86044 * 11 9 8 14 14 H 1.48504 * 109.46582 * 94.69503 * 13 11 9 15 15 H 1.48499 * 109.47234 * 214.69507 * 13 11 9 16 16 H 1.48502 * 109.46792 * 334.69880 * 13 11 9 17 17 C 1.37595 * 119.87433 * 90.00338 * 4 3 2 18 18 H 1.08998 * 109.47491 * 60.00415 * 1 2 3 19 19 H 1.09001 * 109.46900 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.47651 * 299.99789 * 1 2 3 21 21 H 1.09001 * 109.46967 * 59.99994 * 3 2 1 22 22 H 1.09007 * 109.47265 * 300.00063 * 3 2 1 23 23 H 1.08005 * 119.75084 * 0.05290 * 5 4 3 24 24 H 1.07994 * 119.87907 * 179.72408 * 6 5 4 25 25 H 1.07991 * 120.12819 * 180.25140 * 7 6 5 26 26 H 0.97002 * 120.00124 * 179.97438 * 12 11 9 27 27 H 1.07998 * 120.13108 * 359.97438 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.2000 1.1271 1.2032 6 6 5.5822 1.0238 1.2189 7 6 6.2868 0.9680 0.0378 8 6 5.5991 1.0217 -1.1884 9 6 6.3124 0.9657 -2.4080 10 1 5.8825 1.3867 -3.3048 11 6 7.5754 0.3649 -2.4530 12 7 7.9515 -0.4399 -1.4925 13 14 8.7245 0.7118 -3.8844 14 1 9.6474 1.8172 -3.5214 15 1 9.5116 -0.5087 -4.1944 16 1 7.9278 1.1029 -5.0750 17 6 4.1961 1.1323 -1.1922 18 1 -0.3634 0.5137 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8900 21 1 1.6884 1.8464 0.8900 22 1 1.6884 1.8465 -0.8900 23 1 3.6549 1.1655 2.1348 24 1 6.1079 0.9827 2.1614 25 1 7.3633 0.8835 0.0524 26 1 8.8268 -0.8568 -1.5239 27 1 3.6582 1.1744 -2.1278 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213811908.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:21 Heat of formation + Delta-G solvation = -53.959599 kcal Electronic energy + Delta-G solvation = -11330.521296 eV Core-core repulsion = 9245.047810 eV Total energy + Delta-G solvation = -2085.473486 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.76187 -38.31840 -35.59923 -32.32073 -31.75611 -27.96111 -27.19006 -25.93988 -22.62588 -21.98263 -18.96171 -17.32787 -17.21769 -16.72816 -16.38428 -16.07735 -15.13580 -14.94737 -14.23327 -13.54133 -13.36030 -13.13737 -12.93744 -12.71219 -12.50077 -12.19276 -12.13387 -11.42705 -11.28404 -11.04028 -10.57093 -9.41437 -9.27483 -8.64177 -6.35828 0.93080 0.99188 1.38158 1.51923 1.52511 2.21237 2.65881 3.16918 3.80136 4.16369 4.23698 4.47257 4.55675 4.57976 4.62701 4.71855 4.85100 5.01216 5.12274 5.28705 5.47321 5.67071 5.99629 6.07911 6.15677 6.30492 6.37895 6.67760 6.92538 7.01477 8.33866 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.056357 B = 0.009199 C = 0.008369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.712249 B = 3043.059457 C = 3344.875576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.417 6.417 3 C 0.116 3.884 4 C -0.078 4.078 5 C -0.221 4.221 6 C -0.112 4.112 7 C -0.187 4.187 8 C 0.074 3.926 9 C -0.502 4.502 10 H 0.075 0.925 11 C 0.034 3.966 12 N -0.828 5.828 13 Si 0.986 3.014 14 H -0.261 1.261 15 H -0.267 1.267 16 H -0.258 1.258 17 C -0.222 4.222 18 H 0.050 0.950 19 H 0.095 0.905 20 H 0.055 0.945 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.117 0.883 24 H 0.115 0.885 25 H 0.103 0.897 26 H 0.288 0.712 27 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 2.430 1.087 7.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.337 6.337 3 C 0.040 3.960 4 C -0.078 4.078 5 C -0.240 4.240 6 C -0.130 4.130 7 C -0.206 4.206 8 C 0.071 3.929 9 C -0.532 4.532 10 H 0.093 0.907 11 C -0.180 4.180 12 N -0.454 5.454 13 Si 0.806 3.194 14 H -0.185 1.185 15 H -0.192 1.192 16 H -0.182 1.182 17 C -0.241 4.241 18 H 0.068 0.932 19 H 0.113 0.887 20 H 0.074 0.926 21 H 0.088 0.912 22 H 0.076 0.924 23 H 0.135 0.865 24 H 0.133 0.867 25 H 0.121 0.879 26 H 0.099 0.901 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.350 2.102 1.161 6.789 hybrid contribution 0.466 0.114 -0.531 0.715 sum -5.885 2.216 0.630 6.319 Atomic orbital electron populations 1.22959 0.79549 1.03744 1.01002 1.87982 1.21534 1.28638 1.95545 1.21315 0.89302 0.84465 1.00929 1.19495 0.94147 1.00749 0.93399 1.20622 0.93925 1.12953 0.96550 1.21000 0.94623 1.00190 0.97221 1.21359 0.99312 1.07577 0.92379 1.17999 0.91819 0.89007 0.94027 1.19830 1.02212 1.35231 0.95916 0.90670 1.26797 0.99333 0.91692 1.00212 1.69887 1.20788 1.20746 1.33970 0.85146 0.77583 0.78915 0.77745 1.18546 1.19184 1.18187 1.21043 0.93812 1.12933 0.96325 0.93186 0.88660 0.92626 0.91180 0.92359 0.86496 0.86733 0.87859 0.90091 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 11.01 113.37 1.25 1.82 15 2 O -0.42 -15.43 10.69 -148.98 -1.59 -17.03 15 3 C 0.12 4.19 6.05 71.23 0.43 4.63 15 4 C -0.08 -3.59 5.50 -19.92 -0.11 -3.70 15 5 C -0.22 -10.06 9.70 22.46 0.22 -9.84 15 6 C -0.11 -5.43 10.02 22.22 0.22 -5.20 15 7 C -0.19 -10.28 8.70 22.73 0.20 -10.08 15 8 C 0.07 4.18 5.58 -21.29 -0.12 4.06 15 9 C -0.50 -28.20 9.05 23.46 0.21 -27.98 15 10 H 0.08 4.07 7.91 -2.91 -0.02 4.04 15 11 C 0.03 1.78 5.14 85.25 0.44 2.22 15 12 N -0.83 -44.76 10.95 21.82 0.24 -44.52 15 13 Si 0.99 39.11 29.60 68.60 2.03 41.14 15 14 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 15 H -0.27 -10.05 7.11 99.48 0.71 -9.34 15 16 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 17 C -0.22 -11.54 9.44 22.73 0.21 -11.33 15 18 H 0.05 1.08 8.14 -2.39 -0.02 1.06 15 19 H 0.09 2.02 8.14 -2.39 -0.02 2.00 15 20 H 0.06 1.14 8.14 -2.39 -0.02 1.12 15 21 H 0.07 2.15 8.09 -2.39 -0.02 2.13 15 22 H 0.06 1.94 8.08 -2.38 -0.02 1.92 15 23 H 0.12 4.55 8.06 -2.91 -0.02 4.53 15 24 H 0.11 4.81 8.06 -2.91 -0.02 4.79 15 25 H 0.10 5.88 6.15 -2.92 -0.02 5.86 15 26 H 0.29 14.00 8.30 -92.71 -0.77 13.23 15 27 H 0.09 4.69 8.06 -2.91 -0.02 4.67 15 Total: -1.00 -63.11 239.88 4.78 -58.33 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 1.14 Total: 17.50 kcal Atomic # 6 Polarization: -58.37 SS G_CDS: 2.95 Total: -55.41 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.24 Total: -44.52 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -1.59 Total: -17.03 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Total: -63.11 4.78 -58.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213811908.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.370 kcal (2) G-P(sol) polarization free energy of solvation -63.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds