Wall clock time and date at job start Mon Mar 30 2020 02:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38341 * 119.70200 * 2 1 4 4 C 1.38403 * 120.05172 * 179.97438 * 3 2 1 5 5 O 1.35640 * 120.27083 * 180.02562 * 4 3 2 6 6 C 1.41356 * 119.46611 * 0.02562 * 4 3 2 7 7 C 1.41156 * 120.29026 * 179.97438 * 6 4 3 8 8 H 1.08002 * 119.99792 * 28.12126 * 7 6 4 9 9 C 1.39935 * 120.00159 * 208.12069 * 7 6 4 10 10 N 1.30865 * 120.00137 * 13.05917 * 9 7 6 11 11 Si 1.86799 * 119.99890 * 193.06086 * 9 7 6 12 12 H 1.48500 * 109.47256 * 90.00354 * 11 9 7 13 13 H 1.48510 * 109.47044 * 209.99803 * 11 9 7 14 14 H 1.48498 * 109.47314 * 329.99878 * 11 9 7 15 15 C 1.40686 * 119.42226 * 359.73697 * 6 4 3 16 16 C 1.36529 * 119.92878 * 0.50763 * 15 6 4 17 17 C 1.50699 * 119.73386 * 179.75806 * 16 15 6 18 18 H 1.09004 * 109.47324 * 270.01642 * 1 2 3 19 19 H 1.09004 * 109.47584 * 30.01978 * 1 2 3 20 20 H 1.09004 * 109.47508 * 150.02249 * 1 2 3 21 21 H 1.07999 * 119.98011 * 359.97438 * 3 2 1 22 22 H 0.96698 * 114.00383 * 84.98232 * 5 4 3 23 23 H 0.96992 * 120.00010 * 179.97438 * 10 9 7 24 24 H 1.08002 * 120.03661 * 180.28857 * 15 6 4 25 25 H 1.08999 * 109.46967 * 269.72898 * 17 16 15 26 26 H 1.08995 * 109.47434 * 149.72980 * 17 16 15 27 27 H 1.09005 * 109.46903 * 29.73018 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.2017 0.0000 4 6 3.5765 1.2101 0.0005 5 8 4.2531 2.3857 0.0011 6 6 4.2793 -0.0163 0.0005 7 6 5.6908 -0.0280 0.0005 8 1 6.2376 0.7924 0.4414 9 6 6.3817 -1.1026 -0.5707 10 7 5.7456 -1.9633 -1.3238 11 14 8.2118 -1.3084 -0.2581 12 1 8.4163 -2.1431 0.9530 13 1 8.8423 -1.9710 -1.4281 14 1 8.8316 0.0250 -0.0508 15 6 3.5597 -1.2253 0.0056 16 6 2.1946 -1.2054 0.0000 17 6 1.4283 -2.5030 -0.0001 18 1 -0.3634 0.0003 1.0277 19 1 -0.3634 0.8898 -0.5141 20 1 -0.3634 -0.8902 -0.5135 21 1 1.6473 2.1339 -0.0004 22 1 4.3820 2.7650 0.8812 23 1 6.2245 -2.7079 -1.7200 24 1 4.0867 -2.1680 0.0104 25 1 1.2435 -2.8158 -1.0277 26 1 0.4772 -2.3634 0.5137 27 1 2.0099 -3.2685 0.5138 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213812000.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:43 Heat of formation + Delta-G solvation = -44.124760 kcal Electronic energy + Delta-G solvation = -11683.260104 eV Core-core repulsion = 9598.213089 eV Total energy + Delta-G solvation = -2085.047015 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.34237 -35.72184 -34.00382 -30.87205 -30.49894 -27.42422 -25.39507 -23.59732 -20.77858 -19.61012 -17.17473 -16.36461 -15.24204 -14.42397 -14.01022 -13.67441 -13.07842 -12.57330 -12.22086 -12.08631 -11.97792 -11.46746 -11.34079 -11.10802 -10.88711 -10.55216 -10.25538 -10.08524 -9.57621 -9.13705 -8.94434 -7.32488 -7.07625 -6.69286 -4.31301 2.70233 2.89822 3.08368 3.12596 3.18713 3.95296 4.57877 5.39743 5.74086 5.96213 6.01264 6.18769 6.32289 6.36503 6.38857 6.48552 6.61941 6.67637 7.09683 7.24118 7.36974 7.55092 7.74409 7.91583 8.10021 8.27350 8.51129 8.78505 8.86436 9.22289 10.22507 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.043834 B = 0.013127 C = 0.010415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.622453 B = 2132.418940 C = 2687.765934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.200 4.200 3 C -0.113 4.113 4 C -0.024 4.024 5 O -0.492 6.492 6 C 0.092 3.908 7 C -0.447 4.447 8 H 0.079 0.921 9 C 0.072 3.928 10 N -0.798 5.798 11 Si 0.912 3.088 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.262 1.262 15 C -0.144 4.144 16 C -0.079 4.079 17 C -0.102 4.102 18 H 0.044 0.956 19 H 0.044 0.956 20 H 0.050 0.950 21 H 0.093 0.907 22 H 0.351 0.649 23 H 0.280 0.720 24 H 0.122 0.878 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.107 -0.263 2.961 4.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.202 4.202 3 C -0.131 4.131 4 C -0.070 4.070 5 O -0.298 6.298 6 C 0.089 3.911 7 C -0.476 4.476 8 H 0.097 0.903 9 C -0.145 4.145 10 N -0.424 5.424 11 Si 0.737 3.263 12 H -0.194 1.194 13 H -0.203 1.203 14 H -0.186 1.186 15 C -0.164 4.164 16 C -0.080 4.080 17 C -0.159 4.159 18 H 0.062 0.938 19 H 0.063 0.937 20 H 0.069 0.931 21 H 0.111 0.889 22 H 0.202 0.798 23 H 0.091 0.909 24 H 0.139 0.861 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.047 -0.569 2.177 3.788 hybrid contribution 0.865 -0.003 0.497 0.998 sum -2.182 -0.572 2.674 3.498 Atomic orbital electron populations 1.20461 0.93684 1.00453 0.99770 1.18869 0.93750 0.92391 1.15147 1.20709 0.93440 0.96176 1.02813 1.18676 0.88938 0.84677 1.14678 1.84811 1.77729 1.36136 1.31131 1.17890 0.93779 0.90160 0.89249 1.19425 0.91346 1.04152 1.32726 0.90303 1.25922 1.01057 0.94592 0.92934 1.69823 1.38410 1.11705 1.22456 0.86243 0.81888 0.79486 0.78678 1.19368 1.20299 1.18609 1.20863 0.91603 0.98495 1.05406 1.19148 0.94194 0.93138 1.01487 1.20679 0.98898 0.95617 1.00705 0.93758 0.93714 0.93106 0.88873 0.79808 0.90935 0.86065 0.92699 0.92972 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.56 9.17 36.01 0.33 -1.23 15 2 C -0.20 -4.51 5.90 -104.38 -0.62 -5.12 15 3 C -0.11 -2.65 9.62 -39.48 -0.38 -3.03 15 4 C -0.02 -0.63 6.74 -38.34 -0.26 -0.89 15 5 O -0.49 -11.70 12.84 -18.62 -0.24 -11.94 15 6 C 0.09 2.53 5.56 -106.68 -0.59 1.94 15 7 C -0.45 -12.21 8.69 -37.84 -0.33 -12.54 15 8 H 0.08 2.10 7.69 -52.49 -0.40 1.69 15 9 C 0.07 1.85 5.21 -17.33 -0.09 1.75 15 10 N -0.80 -21.06 10.94 55.55 0.61 -20.46 15 11 Si 0.91 19.11 29.58 -169.99 -5.03 14.08 15 12 H -0.27 -5.49 7.11 56.52 0.40 -5.08 15 13 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 14 H -0.26 -5.46 7.11 56.52 0.40 -5.06 15 15 C -0.14 -3.79 8.23 -39.27 -0.32 -4.11 15 16 C -0.08 -1.86 5.84 -105.04 -0.61 -2.47 15 17 C -0.10 -1.94 9.16 36.01 0.33 -1.61 15 18 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 19 H 0.04 0.74 8.08 -51.93 -0.42 0.32 15 20 H 0.05 0.84 6.66 -51.93 -0.35 0.50 15 21 H 0.09 1.97 8.06 -52.49 -0.42 1.55 15 22 H 0.35 6.55 9.06 45.56 0.41 6.96 15 23 H 0.28 6.71 8.30 -40.82 -0.34 6.37 15 24 H 0.12 3.26 6.27 -52.49 -0.33 2.93 15 25 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 26 H 0.05 0.87 6.66 -51.93 -0.35 0.52 15 27 H 0.05 0.96 8.07 -51.93 -0.42 0.54 15 LS Contribution 233.93 15.07 3.53 3.53 Total: -1.00 -29.35 233.93 -5.93 -35.28 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -2.25 Total: 6.83 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -2.54 Total: -27.32 kcal Atomic # 7 Polarization: -21.06 SS G_CDS: 0.61 Total: -20.46 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: -0.24 Total: -11.94 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -29.35 -5.93 -35.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213812000.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.846 kcal (2) G-P(sol) polarization free energy of solvation -29.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds