Wall clock time and date at job start Mon Mar 30 2020 02:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38341 * 119.70200 * 2 1 4 4 C 1.38403 * 120.05172 * 179.97438 * 3 2 1 5 5 O 1.35640 * 120.27083 * 180.02562 * 4 3 2 6 6 C 1.41356 * 119.46611 * 0.02562 * 4 3 2 7 7 C 1.41156 * 120.29026 * 179.97438 * 6 4 3 8 8 H 1.08002 * 119.99792 * 28.12126 * 7 6 4 9 9 C 1.39935 * 120.00159 * 208.12069 * 7 6 4 10 10 N 1.30865 * 120.00137 * 13.05917 * 9 7 6 11 11 Si 1.86799 * 119.99890 * 193.06086 * 9 7 6 12 12 H 1.48500 * 109.47256 * 90.00354 * 11 9 7 13 13 H 1.48510 * 109.47044 * 209.99803 * 11 9 7 14 14 H 1.48498 * 109.47314 * 329.99878 * 11 9 7 15 15 C 1.40686 * 119.42226 * 359.73697 * 6 4 3 16 16 C 1.36529 * 119.92878 * 0.50763 * 15 6 4 17 17 C 1.50699 * 119.73386 * 179.75806 * 16 15 6 18 18 H 1.09004 * 109.47324 * 270.01642 * 1 2 3 19 19 H 1.09004 * 109.47584 * 30.01978 * 1 2 3 20 20 H 1.09004 * 109.47508 * 150.02249 * 1 2 3 21 21 H 1.07999 * 119.98011 * 359.97438 * 3 2 1 22 22 H 0.96698 * 114.00383 * 84.98232 * 5 4 3 23 23 H 0.96992 * 120.00010 * 179.97438 * 10 9 7 24 24 H 1.08002 * 120.03661 * 180.28857 * 15 6 4 25 25 H 1.08999 * 109.46967 * 269.72898 * 17 16 15 26 26 H 1.08995 * 109.47434 * 149.72980 * 17 16 15 27 27 H 1.09005 * 109.46903 * 29.73018 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.2017 0.0000 4 6 3.5765 1.2101 0.0005 5 8 4.2531 2.3857 0.0011 6 6 4.2793 -0.0163 0.0005 7 6 5.6908 -0.0280 0.0005 8 1 6.2376 0.7924 0.4414 9 6 6.3817 -1.1026 -0.5707 10 7 5.7456 -1.9633 -1.3238 11 14 8.2118 -1.3084 -0.2581 12 1 8.4163 -2.1431 0.9530 13 1 8.8423 -1.9710 -1.4281 14 1 8.8316 0.0250 -0.0508 15 6 3.5597 -1.2253 0.0056 16 6 2.1946 -1.2054 0.0000 17 6 1.4283 -2.5030 -0.0001 18 1 -0.3634 0.0003 1.0277 19 1 -0.3634 0.8898 -0.5141 20 1 -0.3634 -0.8902 -0.5135 21 1 1.6473 2.1339 -0.0004 22 1 4.3820 2.7650 0.8812 23 1 6.2245 -2.7079 -1.7200 24 1 4.0867 -2.1680 0.0104 25 1 1.2435 -2.8158 -1.0277 26 1 0.4772 -2.3634 0.5137 27 1 2.0099 -3.2685 0.5138 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213812000.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:42 Heat of formation + Delta-G solvation = -63.000408 kcal Electronic energy + Delta-G solvation = -11684.078613 eV Core-core repulsion = 9598.213089 eV Total energy + Delta-G solvation = -2085.865525 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.19558 -37.55478 -35.89114 -32.69706 -32.22804 -29.19163 -27.13270 -25.40073 -22.62789 -21.46035 -19.10779 -18.24070 -17.05583 -16.22572 -15.82357 -15.46761 -14.64621 -14.35850 -14.01278 -13.65683 -13.43809 -13.26615 -13.06894 -12.72034 -12.58231 -12.20900 -12.00146 -11.85527 -11.41071 -11.00003 -10.81034 -9.22759 -8.95477 -8.57915 -6.31310 0.86527 1.01250 1.36334 1.48864 1.50686 2.20818 2.69507 3.51602 3.92455 4.31783 4.40888 4.68688 4.74557 4.78231 4.91836 5.01565 5.14401 5.17926 5.19803 5.36904 5.50773 5.69327 5.90141 6.03018 6.22251 6.36403 6.61501 6.88085 6.90290 7.39644 8.35657 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.043834 B = 0.013127 C = 0.010415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.622453 B = 2132.418940 C = 2687.765934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.195 4.195 3 C -0.123 4.123 4 C -0.043 4.043 5 O -0.504 6.504 6 C 0.054 3.946 7 C -0.488 4.488 8 H 0.071 0.929 9 C 0.029 3.971 10 N -0.832 5.832 11 Si 0.987 3.013 12 H -0.259 1.259 13 H -0.268 1.268 14 H -0.262 1.262 15 C -0.168 4.168 16 C -0.090 4.090 17 C -0.098 4.098 18 H 0.066 0.934 19 H 0.059 0.941 20 H 0.067 0.933 21 H 0.118 0.882 22 H 0.373 0.627 23 H 0.287 0.713 24 H 0.104 0.896 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.260 -0.426 3.258 5.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.196 4.196 3 C -0.142 4.142 4 C -0.088 4.088 5 O -0.312 6.312 6 C 0.051 3.949 7 C -0.518 4.518 8 H 0.089 0.911 9 C -0.184 4.184 10 N -0.459 5.459 11 Si 0.807 3.193 12 H -0.183 1.183 13 H -0.192 1.192 14 H -0.186 1.186 15 C -0.188 4.188 16 C -0.090 4.090 17 C -0.154 4.154 18 H 0.085 0.915 19 H 0.078 0.922 20 H 0.086 0.914 21 H 0.136 0.864 22 H 0.227 0.773 23 H 0.097 0.903 24 H 0.122 0.878 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.223 -0.723 2.487 4.953 hybrid contribution 1.070 0.122 0.419 1.155 sum -3.153 -0.601 2.905 4.329 Atomic orbital electron populations 1.20523 0.89836 1.02109 1.01672 1.19493 0.96579 0.91499 1.12039 1.21044 0.92734 0.97895 1.02499 1.18947 0.90108 0.84704 1.15024 1.84709 1.77835 1.35554 1.33116 1.18299 0.94511 0.91448 0.90634 1.19612 0.91948 1.05347 1.34855 0.91064 1.26777 1.05806 0.93774 0.92059 1.69878 1.40384 1.12383 1.23235 0.85141 0.75736 0.79386 0.79009 1.18315 1.19218 1.18610 1.20873 0.93078 0.97532 1.07276 1.19660 0.93579 0.95730 1.00076 1.20702 0.99627 0.93332 1.01770 0.91548 0.92197 0.91434 0.86422 0.77347 0.90264 0.87795 0.91758 0.89981 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.67 9.17 71.24 0.65 -2.02 15 2 C -0.19 -8.34 5.90 -19.71 -0.12 -8.46 15 3 C -0.12 -5.64 9.62 22.33 0.21 -5.43 15 4 C -0.04 -2.22 6.74 23.08 0.16 -2.07 15 5 O -0.50 -24.16 12.84 -89.54 -1.15 -25.31 15 6 C 0.05 3.04 5.56 -21.20 -0.12 2.92 15 7 C -0.49 -27.68 8.69 23.40 0.20 -27.48 15 8 H 0.07 3.95 7.69 -2.91 -0.02 3.93 15 9 C 0.03 1.54 5.21 85.25 0.44 1.98 15 10 N -0.83 -45.14 10.94 21.83 0.24 -44.90 15 11 Si 0.99 39.87 29.58 68.60 2.03 41.89 15 12 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 13 H -0.27 -10.25 7.11 99.48 0.71 -9.55 15 14 H -0.26 -10.45 7.11 99.48 0.71 -9.74 15 15 C -0.17 -9.03 8.23 22.47 0.18 -8.84 15 16 C -0.09 -4.14 5.84 -20.14 -0.12 -4.25 15 17 C -0.10 -3.49 9.16 71.24 0.65 -2.83 15 18 H 0.07 1.85 8.14 -2.38 -0.02 1.83 15 19 H 0.06 1.72 8.08 -2.38 -0.02 1.70 15 20 H 0.07 1.92 6.66 -2.39 -0.02 1.90 15 21 H 0.12 4.70 8.06 -2.91 -0.02 4.68 15 22 H 0.37 13.97 9.06 -74.06 -0.67 13.30 15 23 H 0.29 14.04 8.30 -92.71 -0.77 13.27 15 24 H 0.10 5.82 6.27 -2.91 -0.02 5.80 15 25 H 0.06 2.18 8.14 -2.39 -0.02 2.16 15 26 H 0.08 2.41 6.66 -2.39 -0.02 2.40 15 27 H 0.05 1.92 8.07 -2.38 -0.02 1.90 15 Total: -1.00 -64.22 233.93 3.78 -60.44 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: 0.51 Total: 24.35 kcal Atomic # 6 Polarization: -58.63 SS G_CDS: 2.16 Total: -56.47 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.24 Total: -44.90 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -1.15 Total: -25.31 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.89 kcal Total: -64.22 3.78 -60.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213812000.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.562 kcal (2) G-P(sol) polarization free energy of solvation -64.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds