Wall clock time and date at job start Mon Mar 30 2020 02:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46954 * 2 1 4 4 C 1.38825 * 119.72865 * 89.99963 * 3 2 1 5 5 C 1.38300 * 120.58963 * 180.02562 * 4 3 2 6 6 C 1.38451 * 120.05337 * 359.97438 * 5 4 3 7 7 O 1.35645 * 120.26771 * 179.97438 * 6 5 4 8 8 C 1.41324 * 119.46739 * 0.02562 * 6 5 4 9 9 C 1.41157 * 120.29011 * 179.97438 * 8 6 5 10 10 H 1.07996 * 119.99448 * 330.13699 * 9 8 6 11 11 C 1.39936 * 119.99923 * 150.41517 * 9 8 6 12 12 N 1.30864 * 119.99768 * 162.13443 * 11 9 8 13 13 Si 1.86793 * 119.99917 * 342.13562 * 11 9 8 14 14 H 1.48502 * 109.47373 * 87.05751 * 13 11 9 15 15 H 1.48503 * 109.47246 * 207.05278 * 13 11 9 16 16 H 1.48500 * 109.47380 * 327.05392 * 13 11 9 17 17 C 1.36489 * 119.73173 * 270.26020 * 3 2 1 18 18 H 1.08997 * 109.47397 * 299.99600 * 1 2 3 19 19 H 1.08995 * 109.47304 * 60.00482 * 1 2 3 20 20 H 1.09005 * 109.46642 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47423 * 239.99612 * 2 1 3 22 22 H 1.09007 * 109.47113 * 119.99908 * 2 1 3 23 23 H 1.07995 * 119.70647 * 359.97438 * 4 3 2 24 24 H 1.08002 * 119.97891 * 179.97438 * 5 4 3 25 25 H 0.96697 * 113.99838 * 271.90726 * 7 6 5 26 26 H 0.97001 * 119.99913 * 179.97438 * 12 11 9 27 27 H 1.07995 * 120.03420 * 0.02562 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2618 2.0699 1.2055 5 6 2.7222 3.3738 1.2263 6 6 2.9592 4.0445 0.0385 7 8 3.4103 5.3236 0.0538 8 6 2.7265 3.3859 -1.1901 9 6 2.9618 4.0534 -2.4114 10 1 2.8465 5.1255 -2.4718 11 6 3.3390 3.3252 -3.5453 12 7 3.2206 3.8584 -4.7345 13 14 4.0114 1.5922 -3.3614 14 1 2.8857 0.6239 -3.3426 15 1 4.9089 1.2856 -4.5040 16 1 4.7741 1.4893 -2.0914 17 6 2.2528 2.0608 -1.1852 18 1 -0.3634 0.5137 0.8900 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5139 -0.8899 22 1 1.8934 -0.5139 0.8900 23 1 2.0783 1.5523 2.1354 24 1 2.8969 3.8695 2.1698 25 1 2.7084 5.9878 0.0872 26 1 3.4824 3.3538 -5.5205 27 1 2.0672 1.5497 -2.1182 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213812157.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:27 Heat of formation + Delta-G solvation = -42.206421 kcal Electronic energy + Delta-G solvation = -11723.411545 eV Core-core repulsion = 9638.447715 eV Total energy + Delta-G solvation = -2084.963830 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.50785 -35.90066 -33.86592 -32.39594 -30.41591 -27.79333 -25.06751 -22.87902 -21.52868 -19.61917 -17.29677 -17.18320 -15.17834 -14.77629 -14.40224 -13.98452 -13.29594 -13.02299 -12.67982 -12.55996 -11.95221 -11.62240 -11.32770 -10.98195 -10.78422 -10.54145 -10.28977 -10.07184 -9.69968 -9.46150 -8.85070 -7.70166 -7.34258 -6.96688 -4.46011 2.46942 2.61214 3.09876 3.19530 3.31793 3.97411 4.43117 5.17957 5.51511 5.54211 5.60972 5.89449 6.02059 6.18065 6.22246 6.35068 6.42931 6.61344 6.66242 6.91179 7.17173 7.28260 7.51213 7.64963 7.85519 8.04974 8.30759 8.48680 8.75043 9.03808 10.05532 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.028686 B = 0.018517 C = 0.012676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.861272 B = 1511.764986 C = 2208.288506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.049 4.049 4 C -0.231 4.231 5 C -0.103 4.103 6 C -0.012 4.012 7 O -0.491 6.491 8 C 0.074 3.926 9 C -0.431 4.431 10 H 0.092 0.908 11 C 0.083 3.917 12 N -0.806 5.806 13 Si 0.914 3.086 14 H -0.266 1.266 15 H -0.291 1.291 16 H -0.248 1.248 17 C -0.229 4.229 18 H 0.053 0.947 19 H 0.055 0.945 20 H 0.047 0.953 21 H 0.059 0.941 22 H 0.061 0.939 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.357 0.643 26 H 0.286 0.714 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 -5.006 5.277 7.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.121 4.121 3 C -0.049 4.049 4 C -0.251 4.251 5 C -0.122 4.122 6 C -0.057 4.057 7 O -0.297 6.297 8 C 0.070 3.930 9 C -0.459 4.459 10 H 0.110 0.890 11 C -0.136 4.136 12 N -0.430 5.430 13 Si 0.741 3.259 14 H -0.192 1.192 15 H -0.218 1.218 16 H -0.172 1.172 17 C -0.248 4.248 18 H 0.072 0.928 19 H 0.074 0.926 20 H 0.066 0.934 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.113 0.887 24 H 0.117 0.883 25 H 0.209 0.791 26 H 0.096 0.904 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.158 -5.228 4.949 7.515 hybrid contribution -0.180 -0.389 -0.082 0.437 sum -2.338 -5.617 4.867 7.791 Atomic orbital electron populations 1.21704 0.95507 1.00472 1.02200 1.20503 0.95730 0.94496 1.01363 1.19156 0.97889 0.94332 0.93565 1.20082 1.13336 0.95867 0.95779 1.20935 0.99394 0.95544 0.96282 1.18576 1.09448 0.85977 0.91727 1.84788 1.34727 1.13805 1.96403 1.18017 0.90083 0.91893 0.93000 1.19325 1.38488 0.97045 0.91061 0.88989 1.26173 0.92895 1.00346 0.94206 1.69703 1.34682 1.39522 0.99142 0.86349 0.79364 0.81278 0.78900 1.19174 1.21849 1.17164 1.20694 1.10735 0.96843 0.96531 0.92757 0.92560 0.93430 0.92185 0.92041 0.88665 0.88298 0.79127 0.90392 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.89 37.16 0.37 -1.81 15 2 C -0.08 -1.47 6.04 -27.88 -0.17 -1.64 15 3 C -0.05 -1.07 5.09 -105.04 -0.54 -1.60 15 4 C -0.23 -4.88 9.69 -39.34 -0.38 -5.26 15 5 C -0.10 -2.26 9.98 -39.48 -0.39 -2.65 15 6 C -0.01 -0.30 6.74 -38.33 -0.26 -0.55 15 7 O -0.49 -11.25 12.86 -18.63 -0.24 -11.49 15 8 C 0.07 1.93 5.12 -106.68 -0.55 1.38 15 9 C -0.43 -11.99 9.19 -37.84 -0.35 -12.34 15 10 H 0.09 2.67 7.90 -52.49 -0.41 2.26 15 11 C 0.08 2.22 5.41 -17.33 -0.09 2.12 15 12 N -0.81 -21.78 13.93 55.55 0.77 -21.01 15 13 Si 0.91 21.39 24.66 -169.99 -4.19 17.20 15 14 H -0.27 -5.92 6.29 56.52 0.36 -5.56 15 15 H -0.29 -6.50 7.11 56.52 0.40 -6.10 15 16 H -0.25 -6.05 7.11 56.52 0.40 -5.65 15 17 C -0.23 -5.59 6.89 -39.27 -0.27 -5.86 15 18 H 0.05 0.81 8.14 -51.93 -0.42 0.38 15 19 H 0.06 0.91 8.14 -51.93 -0.42 0.49 15 20 H 0.05 0.61 8.14 -51.93 -0.42 0.18 15 21 H 0.06 1.05 8.08 -51.93 -0.42 0.63 15 22 H 0.06 0.97 8.08 -51.92 -0.42 0.55 15 23 H 0.10 1.75 8.06 -52.49 -0.42 1.33 15 24 H 0.10 1.92 8.06 -52.49 -0.42 1.49 15 25 H 0.36 6.50 9.06 45.56 0.41 6.91 15 26 H 0.29 6.98 8.30 -40.82 -0.34 6.64 15 27 H 0.11 2.61 4.47 -52.49 -0.23 2.37 15 LS Contribution 232.43 15.07 3.50 3.50 Total: -1.00 -28.93 232.43 -5.15 -34.09 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -2.37 Total: 5.92 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: -2.63 Total: -28.21 kcal Atomic # 7 Polarization: -21.78 SS G_CDS: 0.77 Total: -21.01 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -0.24 Total: -11.49 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.19 Total: 17.20 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -28.93 -5.15 -34.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213812157.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.119 kcal (2) G-P(sol) polarization free energy of solvation -28.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds