Wall clock time and date at job start Mon Mar 30 2020 02:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46954 * 2 1 4 4 C 1.38825 * 119.72865 * 89.99963 * 3 2 1 5 5 C 1.38300 * 120.58963 * 180.02562 * 4 3 2 6 6 C 1.38451 * 120.05337 * 359.97438 * 5 4 3 7 7 O 1.35645 * 120.26771 * 179.97438 * 6 5 4 8 8 C 1.41324 * 119.46739 * 0.02562 * 6 5 4 9 9 C 1.41157 * 120.29011 * 179.97438 * 8 6 5 10 10 H 1.07996 * 119.99448 * 330.13699 * 9 8 6 11 11 C 1.39936 * 119.99923 * 150.41517 * 9 8 6 12 12 N 1.30864 * 119.99768 * 162.13443 * 11 9 8 13 13 Si 1.86793 * 119.99917 * 342.13562 * 11 9 8 14 14 H 1.48502 * 109.47373 * 87.05751 * 13 11 9 15 15 H 1.48503 * 109.47246 * 207.05278 * 13 11 9 16 16 H 1.48500 * 109.47380 * 327.05392 * 13 11 9 17 17 C 1.36489 * 119.73173 * 270.26020 * 3 2 1 18 18 H 1.08997 * 109.47397 * 299.99600 * 1 2 3 19 19 H 1.08995 * 109.47304 * 60.00482 * 1 2 3 20 20 H 1.09005 * 109.46642 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47423 * 239.99612 * 2 1 3 22 22 H 1.09007 * 109.47113 * 119.99908 * 2 1 3 23 23 H 1.07995 * 119.70647 * 359.97438 * 4 3 2 24 24 H 1.08002 * 119.97891 * 179.97438 * 5 4 3 25 25 H 0.96697 * 113.99838 * 271.90726 * 7 6 5 26 26 H 0.97001 * 119.99913 * 179.97438 * 12 11 9 27 27 H 1.07995 * 120.03420 * 0.02562 * 17 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2618 2.0699 1.2055 5 6 2.7222 3.3738 1.2263 6 6 2.9592 4.0445 0.0385 7 8 3.4103 5.3236 0.0538 8 6 2.7265 3.3859 -1.1901 9 6 2.9618 4.0534 -2.4114 10 1 2.8465 5.1255 -2.4718 11 6 3.3390 3.3252 -3.5453 12 7 3.2206 3.8584 -4.7345 13 14 4.0114 1.5922 -3.3614 14 1 2.8857 0.6239 -3.3426 15 1 4.9089 1.2856 -4.5040 16 1 4.7741 1.4893 -2.0914 17 6 2.2528 2.0608 -1.1852 18 1 -0.3634 0.5137 0.8900 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 1.8934 -0.5139 -0.8899 22 1 1.8934 -0.5139 0.8900 23 1 2.0783 1.5523 2.1354 24 1 2.8969 3.8695 2.1698 25 1 2.7084 5.9878 0.0872 26 1 3.4824 3.3538 -5.5205 27 1 2.0672 1.5497 -2.1182 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213812157.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:27 Heat of formation + Delta-G solvation = -61.879216 kcal Electronic energy + Delta-G solvation = -11724.264621 eV Core-core repulsion = 9638.447715 eV Total energy + Delta-G solvation = -2085.816906 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.30868 -37.64176 -35.76233 -33.96639 -32.28122 -29.42417 -26.97996 -24.36121 -23.33534 -21.34571 -19.23902 -19.00292 -17.00942 -16.53734 -16.18500 -15.65660 -14.90755 -14.67263 -14.31694 -14.16229 -13.76612 -13.30308 -12.91590 -12.72244 -12.50870 -12.17177 -11.89845 -11.67946 -11.49384 -11.34790 -10.67629 -9.55877 -9.13115 -8.93360 -6.49214 0.66618 0.77534 1.21456 1.35290 1.44305 2.08354 2.55388 3.31687 3.84441 4.09096 4.18031 4.39312 4.59660 4.70338 4.79393 4.85263 4.97639 5.08679 5.18425 5.33554 5.40808 5.52840 5.71172 5.80140 6.03531 6.18921 6.35056 6.60438 6.74978 7.28027 8.15229 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.028686 B = 0.018517 C = 0.012676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.861272 B = 1511.764986 C = 2208.288506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.085 4.085 3 C -0.055 4.055 4 C -0.212 4.212 5 C -0.106 4.106 6 C -0.029 4.029 7 O -0.504 6.504 8 C 0.049 3.951 9 C -0.473 4.473 10 H 0.056 0.944 11 C 0.045 3.955 12 N -0.848 5.848 13 Si 0.965 3.035 14 H -0.247 1.247 15 H -0.275 1.275 16 H -0.264 1.264 17 C -0.240 4.240 18 H 0.060 0.940 19 H 0.038 0.962 20 H 0.077 0.923 21 H 0.059 0.941 22 H 0.089 0.911 23 H 0.136 0.864 24 H 0.130 0.870 25 H 0.377 0.623 26 H 0.294 0.706 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.245 -7.447 7.569 11.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.122 4.122 3 C -0.055 4.055 4 C -0.230 4.230 5 C -0.124 4.124 6 C -0.075 4.075 7 O -0.313 6.313 8 C 0.046 3.954 9 C -0.502 4.502 10 H 0.074 0.926 11 C -0.169 4.169 12 N -0.475 5.475 13 Si 0.789 3.211 14 H -0.172 1.172 15 H -0.201 1.201 16 H -0.188 1.188 17 C -0.259 4.259 18 H 0.079 0.921 19 H 0.058 0.942 20 H 0.096 0.904 21 H 0.078 0.922 22 H 0.107 0.893 23 H 0.154 0.846 24 H 0.148 0.852 25 H 0.231 0.769 26 H 0.104 0.896 27 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.671 -7.660 7.244 10.876 hybrid contribution -0.090 0.398 -0.539 0.676 sum -2.761 -7.262 6.705 10.262 Atomic orbital electron populations 1.21684 0.93789 1.02393 1.01702 1.20612 0.97141 0.91671 1.02794 1.19679 0.96610 0.96520 0.92718 1.20645 1.09957 0.95272 0.97169 1.21293 0.98565 0.96046 0.96501 1.18901 1.09611 0.86644 0.92297 1.84701 1.36121 1.14073 1.96413 1.18257 0.90906 0.93191 0.93085 1.19278 1.42231 0.95661 0.93047 0.92593 1.26820 0.92810 1.03570 0.93699 1.69728 1.36754 1.41200 0.99789 0.85571 0.79261 0.77873 0.78401 1.17246 1.20123 1.18843 1.20812 1.11037 0.96355 0.97743 0.92132 0.94237 0.90372 0.92215 0.89252 0.84642 0.85237 0.76916 0.89555 0.88039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.89 71.98 0.71 -2.96 15 2 C -0.08 -2.61 6.04 29.85 0.18 -2.43 15 3 C -0.06 -2.21 5.09 -20.13 -0.10 -2.32 15 4 C -0.21 -7.97 9.69 22.43 0.22 -7.75 15 5 C -0.11 -4.31 9.98 22.34 0.22 -4.09 15 6 C -0.03 -1.42 6.74 23.08 0.16 -1.27 15 7 O -0.50 -23.29 12.86 -89.59 -1.15 -24.44 15 8 C 0.05 2.58 5.12 -21.20 -0.11 2.47 15 9 C -0.47 -27.63 9.19 23.40 0.22 -27.42 15 10 H 0.06 3.52 7.90 -2.91 -0.02 3.49 15 11 C 0.05 2.51 5.41 85.25 0.46 2.97 15 12 N -0.85 -47.77 13.93 21.83 0.30 -47.47 15 13 Si 0.97 44.35 24.66 68.60 1.69 46.05 15 14 H -0.25 -10.49 6.29 99.48 0.63 -9.86 15 15 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 16 H -0.26 -12.65 7.11 99.48 0.71 -11.95 15 17 C -0.24 -11.50 6.89 22.47 0.15 -11.35 15 18 H 0.06 1.52 8.14 -2.39 -0.02 1.50 15 19 H 0.04 1.17 8.14 -2.39 -0.02 1.15 15 20 H 0.08 1.61 8.14 -2.38 -0.02 1.59 15 21 H 0.06 1.85 8.08 -2.39 -0.02 1.83 15 22 H 0.09 2.28 8.08 -2.38 -0.02 2.26 15 23 H 0.14 4.07 8.06 -2.91 -0.02 4.05 15 24 H 0.13 4.47 8.06 -2.91 -0.02 4.44 15 25 H 0.38 13.88 9.06 -74.06 -0.67 13.21 15 26 H 0.29 14.84 8.30 -92.71 -0.77 14.07 15 27 H 0.10 4.89 4.47 -2.91 -0.01 4.88 15 Total: -1.00 -63.71 232.43 3.37 -60.34 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.42 Total: 19.66 kcal Atomic # 6 Polarization: -56.24 SS G_CDS: 2.11 Total: -54.13 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.30 Total: -47.47 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -1.15 Total: -24.44 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.69 Total: 46.05 kcal Total: -63.71 3.37 -60.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213812157.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.539 kcal (2) G-P(sol) polarization free energy of solvation -63.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds