Wall clock time and date at job start Mon Mar 30 2020 02:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35642 * 117.00035 * 2 1 4 4 C 1.38443 * 120.26709 * 356.33924 * 3 2 1 5 5 C 1.38299 * 120.05332 * 179.72684 * 4 3 2 6 6 C 1.38825 * 120.59400 * 359.97438 * 5 4 3 7 7 C 1.36489 * 120.53602 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.03423 * 180.02562 * 7 6 5 9 9 C 1.40724 * 119.92964 * 0.03578 * 7 6 5 10 10 C 1.41150 * 120.29028 * 180.02562 * 9 7 6 11 11 H 1.08002 * 120.00053 * 304.96139 * 10 9 7 12 12 C 1.39935 * 120.00027 * 124.96545 * 10 9 7 13 13 N 1.30872 * 119.99938 * 174.38909 * 12 10 9 14 14 Si 1.86799 * 120.00250 * 354.38927 * 12 10 9 15 15 H 1.48500 * 109.47211 * 95.92704 * 14 12 10 16 16 H 1.48497 * 109.47301 * 215.93220 * 14 12 10 17 17 H 1.48500 * 109.46871 * 335.93176 * 14 12 10 18 18 H 1.09007 * 109.47044 * 64.67119 * 1 2 3 19 19 H 1.09002 * 109.47248 * 184.66732 * 1 2 3 20 20 H 1.09001 * 109.47502 * 304.66792 * 1 2 3 21 21 H 1.08002 * 119.97026 * 359.70165 * 4 3 2 22 22 H 1.08009 * 119.70862 * 180.02562 * 5 4 3 23 23 H 1.07996 * 119.73293 * 179.97438 * 6 5 4 24 24 H 1.08992 * 109.47369 * 89.99775 * 8 7 6 25 25 H 1.09004 * 109.46713 * 209.99891 * 8 7 6 26 26 H 1.08995 * 109.47178 * 329.98822 * 8 7 6 27 27 H 0.96994 * 120.00196 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2983 2.3720 -0.0763 5 6 1.9304 3.6021 -0.0703 6 6 3.3137 3.6852 0.0124 7 6 4.0731 2.5537 0.0898 8 6 5.5738 2.6571 0.1798 9 6 3.4531 1.2904 0.0852 10 6 4.2309 0.1153 0.1654 11 1 5.0222 -0.0583 -0.5489 12 6 3.9768 -0.8248 1.1703 13 7 4.6224 -1.9631 1.1798 14 14 2.7161 -0.4549 2.4982 15 1 1.4115 -1.0573 2.1237 16 1 3.1740 -1.0286 3.7891 17 1 2.5606 1.0154 2.6373 18 1 -0.3633 0.4397 -0.9289 19 1 -0.3634 -1.0243 0.0836 20 1 -0.3634 0.5845 0.8452 21 1 0.2215 2.3190 -0.1411 22 1 1.3426 4.5063 -0.1297 23 1 3.7929 4.6531 0.0156 24 1 5.8722 2.7097 1.2267 25 1 6.0268 1.7807 -0.2837 26 1 5.9078 3.5557 -0.3388 27 1 4.4465 -2.6146 1.8766 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213812645.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:36 Heat of formation + Delta-G solvation = -38.364496 kcal Electronic energy + Delta-G solvation = -12051.811135 eV Core-core repulsion = 9967.013903 eV Total energy + Delta-G solvation = -2084.797232 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.79235 -38.23573 -35.23803 -33.10407 -31.68205 -28.16995 -27.91029 -26.24963 -22.72268 -21.48611 -19.47831 -18.13810 -17.23593 -16.75890 -16.37949 -15.65899 -15.06246 -14.67336 -14.36053 -14.20016 -13.42090 -13.11143 -12.82930 -12.76395 -12.61687 -12.37104 -11.98045 -11.93963 -11.53382 -11.18204 -10.90551 -9.25222 -8.81075 -8.49058 -6.34067 0.72862 0.87034 1.29424 1.37423 1.44635 2.28118 2.80389 2.84086 3.31611 4.19491 4.28960 4.38175 4.42135 4.54050 4.68206 4.69947 4.83197 5.01196 5.06355 5.13652 5.44934 5.55260 5.77539 5.82394 5.98589 6.18123 6.45336 6.62809 6.99434 7.13483 8.56023 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.030360 B = 0.022515 C = 0.015261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.038354 B = 1243.339969 C = 1834.358982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.330 6.330 3 C 0.036 3.964 4 C -0.201 4.201 5 C -0.150 4.150 6 C -0.140 4.140 7 C -0.132 4.132 8 C -0.088 4.088 9 C 0.027 3.973 10 C -0.491 4.491 11 H 0.048 0.952 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.954 3.046 15 H -0.249 1.249 16 H -0.293 1.293 17 H -0.267 1.267 18 H 0.068 0.932 19 H 0.103 0.897 20 H 0.055 0.945 21 H 0.138 0.862 22 H 0.143 0.857 23 H 0.137 0.863 24 H 0.059 0.941 25 H 0.044 0.956 26 H 0.078 0.922 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.671 8.441 0.220 11.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.245 6.245 3 C -0.009 4.009 4 C -0.219 4.219 5 C -0.168 4.168 6 C -0.158 4.158 7 C -0.133 4.133 8 C -0.144 4.144 9 C 0.025 3.975 10 C -0.524 4.524 11 H 0.066 0.934 12 C -0.152 4.152 13 N -0.531 5.531 14 Si 0.780 3.220 15 H -0.174 1.174 16 H -0.221 1.221 17 H -0.192 1.192 18 H 0.087 0.913 19 H 0.121 0.879 20 H 0.074 0.926 21 H 0.155 0.845 22 H 0.161 0.839 23 H 0.155 0.845 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.097 0.903 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.528 8.021 0.295 11.005 hybrid contribution -0.383 -0.422 0.443 0.722 sum -7.911 7.599 0.738 10.994 Atomic orbital electron populations 1.23195 0.78558 1.04245 1.01871 1.86051 1.21618 1.27835 1.89018 1.19868 0.93090 0.84391 1.03573 1.21270 0.99896 0.92284 1.08490 1.21001 0.94485 0.96834 1.04521 1.20763 0.94134 0.97677 1.03211 1.20206 0.97008 0.92126 1.03966 1.20488 0.91123 1.01448 1.01380 1.17365 0.89290 0.94003 0.96855 1.18750 1.17018 1.02521 1.14099 0.93422 1.26263 0.96240 0.92920 0.99743 1.69719 1.41781 1.07484 1.34115 0.85579 0.80535 0.79338 0.76573 1.17402 1.22071 1.19172 0.91304 0.87883 0.92614 0.84471 0.83890 0.84547 0.92241 0.93659 0.90274 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.46 113.37 1.07 1.60 15 2 O -0.33 -15.45 6.65 -89.56 -0.60 -16.04 15 3 C 0.04 1.69 4.99 23.08 0.12 1.80 15 4 C -0.20 -7.80 9.03 22.33 0.20 -7.59 15 5 C -0.15 -5.29 10.04 22.42 0.23 -5.06 15 6 C -0.14 -5.24 9.61 22.00 0.21 -5.03 15 7 C -0.13 -5.96 5.90 -19.67 -0.12 -6.07 15 8 C -0.09 -3.52 9.61 71.24 0.68 -2.83 15 9 C 0.03 1.41 4.41 -21.20 -0.09 1.31 15 10 C -0.49 -29.20 8.05 23.40 0.19 -29.01 15 11 H 0.05 3.09 7.50 -2.91 -0.02 3.07 15 12 C 0.06 3.24 5.25 85.25 0.45 3.69 15 13 N -0.90 -54.85 13.93 21.83 0.30 -54.54 15 14 Si 0.95 47.53 24.51 68.60 1.68 49.21 15 15 H -0.25 -11.61 6.35 99.48 0.63 -10.98 15 16 H -0.29 -14.08 7.11 99.48 0.71 -13.37 15 17 H -0.27 -13.43 6.81 99.48 0.68 -12.75 15 18 H 0.07 1.91 7.77 -2.38 -0.02 1.89 15 19 H 0.10 2.97 8.14 -2.39 -0.02 2.95 15 20 H 0.06 1.66 7.56 -2.39 -0.02 1.64 15 21 H 0.14 4.33 6.33 -2.91 -0.02 4.31 15 22 H 0.14 3.84 8.06 -2.91 -0.02 3.81 15 23 H 0.14 4.07 8.06 -2.91 -0.02 4.05 15 24 H 0.06 2.29 8.14 -2.39 -0.02 2.27 15 25 H 0.04 2.01 6.78 -2.39 -0.02 2.00 15 26 H 0.08 2.52 8.08 -2.39 -0.02 2.50 15 27 H 0.28 15.64 8.30 -92.71 -0.77 14.87 15 Total: -1.00 -67.68 226.42 5.38 -62.31 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.05 Total: 6.27 kcal Atomic # 6 Polarization: -50.14 SS G_CDS: 2.94 Total: -47.20 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.30 Total: -54.54 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.60 Total: -16.04 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 1.68 Total: 49.21 kcal Total: -67.68 5.38 -62.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213812645.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.943 kcal (2) G-P(sol) polarization free energy of solvation -67.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds